Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 AC133552.2-202ENST00000575694 574 ntBASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 AC022517.1-201ENST00000592429 346 ntBASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 CRK-204ENST00000574295 1391 ntTSL 5 BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 AC135050.7-201ENST00000624508 2218 ntBASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 AC020916.1-201ENST00000587762 1774 ntBASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 PCDHB18P-201ENST00000524813 2368 ntBASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 AC080038.1-201ENST00000611274 1154 ntBASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHMP1AQ9HD42 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
CHMP1AQ9HD42 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
CHMP1AQ9HD42 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
CHMP1AQ9HD42 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC16.33■□□□□ 0.21
CHMP1AQ9HD42 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CHMP1AQ9HD42 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
CHMP1AQ9HD42 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CHMP1AQ9HD42 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 RER1-204ENST00000378518 522 ntTSL 3 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
CHMP1AQ9HD42 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 TFP1-202ENST00000475455 1573 ntBASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms