Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.18■□□□□ 0.5
BRF2Q9HAW0 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BRF2Q9HAW0 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 RCC2P6-201ENST00000526625 1557 ntBASIC18.17■□□□□ 0.5
BRF2Q9HAW0 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 AC004951.3-201ENST00000418645 1148 ntBASIC18.17■□□□□ 0.5
BRF2Q9HAW0 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 FAM197Y4-202ENST00000622692 608 ntBASIC18.17■□□□□ 0.5
BRF2Q9HAW0 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.17■□□□□ 0.5
BRF2Q9HAW0 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
BRF2Q9HAW0 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 KRT18P29-201ENST00000397031 1267 ntBASIC18.16■□□□□ 0.5
BRF2Q9HAW0 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 AC091390.4-202ENST00000476426 537 ntBASIC18.16■□□□□ 0.5
BRF2Q9HAW0 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 CR392000.1-201ENST00000624770 1228 ntBASIC18.16■□□□□ 0.5
BRF2Q9HAW0 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.16■□□□□ 0.5
BRF2Q9HAW0 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 AL135905.2-201ENST00000584934 1404 ntBASIC18.15■□□□□ 0.5
BRF2Q9HAW0 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.15■□□□□ 0.5
BRF2Q9HAW0 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.15■□□□□ 0.5
BRF2Q9HAW0 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.14■□□□□ 0.5
BRF2Q9HAW0 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.14■□□□□ 0.5
BRF2Q9HAW0 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
BRF2Q9HAW0 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BRF2Q9HAW0 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
BRF2Q9HAW0 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BRF2Q9HAW0 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BRF2Q9HAW0 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
BRF2Q9HAW0 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms