Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP44Q9H0E7 AL023284.2-201ENST00000405850 579 ntBASIC23.73■■□□□ 1.39
USP44Q9H0E7 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC23.73■■□□□ 1.39
USP44Q9H0E7 FAM210CP-201ENST00000445714 574 ntBASIC23.73■■□□□ 1.39
USP44Q9H0E7 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC23.73■■□□□ 1.39
USP44Q9H0E7 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
USP44Q9H0E7 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
USP44Q9H0E7 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
USP44Q9H0E7 KRT8P45-201ENST00000414328 1447 ntBASIC23.73■■□□□ 1.39
USP44Q9H0E7 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
USP44Q9H0E7 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP44Q9H0E7 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
USP44Q9H0E7 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP44Q9H0E7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP44Q9H0E7 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
USP44Q9H0E7 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP44Q9H0E7 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP44Q9H0E7 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC23.72■■□□□ 1.39
USP44Q9H0E7 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP44Q9H0E7 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP44Q9H0E7 KRT18P21-201ENST00000515767 1272 ntBASIC23.72■■□□□ 1.39
USP44Q9H0E7 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC23.72■■□□□ 1.39
USP44Q9H0E7 CFL2-205ENST00000555765 632 ntTSL 2 BASIC23.72■■□□□ 1.39
USP44Q9H0E7 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC23.72■■□□□ 1.39
USP44Q9H0E7 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP44Q9H0E7 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP44Q9H0E7 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP44Q9H0E7 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP44Q9H0E7 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC23.72■■□□□ 1.39
USP44Q9H0E7 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP44Q9H0E7 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP44Q9H0E7 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC23.71■■□□□ 1.39
USP44Q9H0E7 KRT8P32-201ENST00000512863 1461 ntBASIC23.71■■□□□ 1.39
USP44Q9H0E7 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP44Q9H0E7 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
USP44Q9H0E7 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP44Q9H0E7 AL137013.1-201ENST00000432946 1228 ntBASIC23.71■■□□□ 1.39
USP44Q9H0E7 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
USP44Q9H0E7 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
USP44Q9H0E7 RN7SL850P-201ENST00000579959 291 ntBASIC23.71■■□□□ 1.39
USP44Q9H0E7 AC092865.7-201ENST00000641832 219 ntBASIC23.71■■□□□ 1.39
USP44Q9H0E7 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC23.71■■□□□ 1.39
USP44Q9H0E7 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP44Q9H0E7 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP44Q9H0E7 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
USP44Q9H0E7 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP44Q9H0E7 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
USP44Q9H0E7 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC23.7■■□□□ 1.39
USP44Q9H0E7 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
USP44Q9H0E7 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP44Q9H0E7 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
USP44Q9H0E7 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC23.7■■□□□ 1.38
USP44Q9H0E7 KATNBL1P6-202ENST00000562413 1466 ntBASIC23.7■■□□□ 1.38
USP44Q9H0E7 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP44Q9H0E7 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC23.7■■□□□ 1.38
USP44Q9H0E7 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP44Q9H0E7 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC23.7■■□□□ 1.38
USP44Q9H0E7 KRT18P57-201ENST00000443599 1254 ntBASIC23.7■■□□□ 1.38
USP44Q9H0E7 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC23.7■■□□□ 1.38
USP44Q9H0E7 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP44Q9H0E7 TK2-213ENST00000563369 882 ntTSL 5 BASIC23.7■■□□□ 1.38
USP44Q9H0E7 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
USP44Q9H0E7 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC23.7■■□□□ 1.38
USP44Q9H0E7 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
USP44Q9H0E7 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
USP44Q9H0E7 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP44Q9H0E7 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC23.7■■□□□ 1.38
USP44Q9H0E7 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.38
USP44Q9H0E7 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
USP44Q9H0E7 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC23.7■■□□□ 1.38
USP44Q9H0E7 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC23.7■■□□□ 1.38
USP44Q9H0E7 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
USP44Q9H0E7 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP44Q9H0E7 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
USP44Q9H0E7 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC23.69■■□□□ 1.38
USP44Q9H0E7 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC23.69■■□□□ 1.38
USP44Q9H0E7 RBM42-202ENST00000586618 771 ntTSL 3 BASIC23.69■■□□□ 1.38
USP44Q9H0E7 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC23.69■■□□□ 1.38
USP44Q9H0E7 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC23.69■■□□□ 1.38
USP44Q9H0E7 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
USP44Q9H0E7 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
USP44Q9H0E7 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP44Q9H0E7 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP44Q9H0E7 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
USP44Q9H0E7 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC23.69■■□□□ 1.38
USP44Q9H0E7 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC23.69■■□□□ 1.38
USP44Q9H0E7 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC23.68■■□□□ 1.38
USP44Q9H0E7 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
USP44Q9H0E7 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
USP44Q9H0E7 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP44Q9H0E7 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP44Q9H0E7 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC23.68■■□□□ 1.38
USP44Q9H0E7 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP44Q9H0E7 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP44Q9H0E7 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
USP44Q9H0E7 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
USP44Q9H0E7 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
USP44Q9H0E7 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
USP44Q9H0E7 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC23.68■■□□□ 1.38
USP44Q9H0E7 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms