Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CDX2Q99626 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CDX2Q99626 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC19.88■□□□□ 0.77
CDX2Q99626 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CDX2Q99626 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CDX2Q99626 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CDX2Q99626 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CDX2Q99626 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDX2Q99626 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CDX2Q99626 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDX2Q99626 AP001271.2-201ENST00000624018 1556 ntBASIC19.87■□□□□ 0.77
CDX2Q99626 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDX2Q99626 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDX2Q99626 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDX2Q99626 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CDX2Q99626 FEM1AP1-201ENST00000431297 1995 ntBASIC19.87■□□□□ 0.77
CDX2Q99626 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.87■□□□□ 0.77
CDX2Q99626 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.87■□□□□ 0.77
CDX2Q99626 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.87■□□□□ 0.77
CDX2Q99626 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDX2Q99626 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CDX2Q99626 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CDX2Q99626 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CDX2Q99626 IGHGP-201ENST00000390555 1178 ntBASIC19.87■□□□□ 0.77
CDX2Q99626 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.87■□□□□ 0.77
CDX2Q99626 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.87■□□□□ 0.77
CDX2Q99626 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.87■□□□□ 0.77
CDX2Q99626 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CDX2Q99626 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.87■□□□□ 0.77
CDX2Q99626 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.87■□□□□ 0.77
CDX2Q99626 AC011840.4-201ENST00000578471 627 ntBASIC19.87■□□□□ 0.77
CDX2Q99626 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.87■□□□□ 0.77
CDX2Q99626 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CDX2Q99626 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.87■□□□□ 0.77
CDX2Q99626 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDX2Q99626 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.87■□□□□ 0.77
CDX2Q99626 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CDX2Q99626 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDX2Q99626 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CDX2Q99626 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CDX2Q99626 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDX2Q99626 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
CDX2Q99626 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDX2Q99626 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.86■□□□□ 0.77
CDX2Q99626 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDX2Q99626 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDX2Q99626 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDX2Q99626 AC211486.1-202ENST00000416371 468 ntBASIC19.86■□□□□ 0.77
CDX2Q99626 FGFR3P6-201ENST00000457012 610 ntBASIC19.86■□□□□ 0.77
CDX2Q99626 HLA-J-202ENST00000469281 1241 ntBASIC19.86■□□□□ 0.77
CDX2Q99626 AC211476.1-201ENST00000503899 468 ntBASIC19.86■□□□□ 0.77
CDX2Q99626 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.86■□□□□ 0.77
CDX2Q99626 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.86■□□□□ 0.77
CDX2Q99626 AL596442.2-201ENST00000610240 980 ntBASIC19.86■□□□□ 0.77
CDX2Q99626 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.86■□□□□ 0.77
CDX2Q99626 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
CDX2Q99626 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CDX2Q99626 AC092720.2-201ENST00000602388 1665 ntBASIC19.86■□□□□ 0.77
CDX2Q99626 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CDX2Q99626 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CDX2Q99626 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDX2Q99626 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
CDX2Q99626 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CDX2Q99626 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CDX2Q99626 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.85■□□□□ 0.77
CDX2Q99626 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.85■□□□□ 0.77
CDX2Q99626 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDX2Q99626 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.85■□□□□ 0.77
CDX2Q99626 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.85■□□□□ 0.77
CDX2Q99626 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.85■□□□□ 0.77
CDX2Q99626 COX20P2-201ENST00000452636 358 ntBASIC19.85■□□□□ 0.77
CDX2Q99626 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.85■□□□□ 0.77
CDX2Q99626 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
CDX2Q99626 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CDX2Q99626 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CDX2Q99626 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CDX2Q99626 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CDX2Q99626 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.85■□□□□ 0.77
CDX2Q99626 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDX2Q99626 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDX2Q99626 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDX2Q99626 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CDX2Q99626 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CDX2Q99626 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.84■□□□□ 0.77
CDX2Q99626 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.84■□□□□ 0.77
CDX2Q99626 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CDX2Q99626 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.84■□□□□ 0.77
CDX2Q99626 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDX2Q99626 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDX2Q99626 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDX2Q99626 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CDX2Q99626 AC004832.2-201ENST00000426397 482 ntBASIC19.84■□□□□ 0.77
CDX2Q99626 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.84■□□□□ 0.77
CDX2Q99626 AP006288.1-201ENST00000446065 395 ntBASIC19.84■□□□□ 0.77
CDX2Q99626 LHX6-205ENST00000464484 666 ntTSL 2 BASIC19.84■□□□□ 0.77
CDX2Q99626 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.84■□□□□ 0.77
CDX2Q99626 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.84■□□□□ 0.77
CDX2Q99626 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDX2Q99626 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CDX2Q99626 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms