Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TTC28Q96AY4 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.33■□□□□ 0.68
TTC28Q96AY4 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.33■□□□□ 0.68
TTC28Q96AY4 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.33■□□□□ 0.68
TTC28Q96AY4 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
TTC28Q96AY4 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TTC28Q96AY4 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.32■□□□□ 0.68
TTC28Q96AY4 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TTC28Q96AY4 DUX4L17-201ENST00000557360 1267 ntBASIC19.32■□□□□ 0.68
TTC28Q96AY4 MIR5100-201ENST00000579544 119 ntBASIC19.32■□□□□ 0.68
TTC28Q96AY4 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
TTC28Q96AY4 AC093028.1-201ENST00000622998 982 ntBASIC19.32■□□□□ 0.68
TTC28Q96AY4 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TTC28Q96AY4 KRT8P3-201ENST00000519669 1449 ntBASIC19.32■□□□□ 0.68
TTC28Q96AY4 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TTC28Q96AY4 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.32■□□□□ 0.68
TTC28Q96AY4 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TTC28Q96AY4 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TTC28Q96AY4 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TTC28Q96AY4 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TTC28Q96AY4 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.32■□□□□ 0.68
TTC28Q96AY4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.32■□□□□ 0.68
TTC28Q96AY4 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.32■□□□□ 0.68
TTC28Q96AY4 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.32■□□□□ 0.68
TTC28Q96AY4 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.32■□□□□ 0.68
TTC28Q96AY4 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.32■□□□□ 0.68
TTC28Q96AY4 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
TTC28Q96AY4 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.32■□□□□ 0.68
TTC28Q96AY4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TTC28Q96AY4 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TTC28Q96AY4 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TTC28Q96AY4 AC012640.2-201ENST00000561606 901 ntBASIC19.31■□□□□ 0.68
TTC28Q96AY4 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TTC28Q96AY4 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC19.31■□□□□ 0.68
TTC28Q96AY4 AC063926.2-201ENST00000623766 1308 ntBASIC19.31■□□□□ 0.68
TTC28Q96AY4 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TTC28Q96AY4 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TTC28Q96AY4 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TTC28Q96AY4 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TTC28Q96AY4 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TTC28Q96AY4 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TTC28Q96AY4 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TTC28Q96AY4 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.31■□□□□ 0.68
TTC28Q96AY4 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TTC28Q96AY4 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TTC28Q96AY4 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TTC28Q96AY4 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TTC28Q96AY4 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TTC28Q96AY4 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
TTC28Q96AY4 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.31■□□□□ 0.68
TTC28Q96AY4 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TTC28Q96AY4 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TTC28Q96AY4 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
TTC28Q96AY4 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TTC28Q96AY4 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.3■□□□□ 0.68
TTC28Q96AY4 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TTC28Q96AY4 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TTC28Q96AY4 IGHGP-201ENST00000390555 1178 ntBASIC19.3■□□□□ 0.68
TTC28Q96AY4 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.3■□□□□ 0.68
TTC28Q96AY4 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.3■□□□□ 0.68
TTC28Q96AY4 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TTC28Q96AY4 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TTC28Q96AY4 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TTC28Q96AY4 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TTC28Q96AY4 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC19.3■□□□□ 0.68
TTC28Q96AY4 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.3■□□□□ 0.68
TTC28Q96AY4 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.3■□□□□ 0.68
TTC28Q96AY4 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TTC28Q96AY4 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TTC28Q96AY4 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TTC28Q96AY4 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
TTC28Q96AY4 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TTC28Q96AY4 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
TTC28Q96AY4 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TTC28Q96AY4 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.29■□□□□ 0.68
TTC28Q96AY4 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.29■□□□□ 0.68
TTC28Q96AY4 AP002472.1-201ENST00000577490 586 ntBASIC19.29■□□□□ 0.68
TTC28Q96AY4 AP001269.4-201ENST00000609611 512 ntBASIC19.29■□□□□ 0.68
TTC28Q96AY4 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.29■□□□□ 0.68
TTC28Q96AY4 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TTC28Q96AY4 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
TTC28Q96AY4 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC19.29■□□□□ 0.68
TTC28Q96AY4 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TTC28Q96AY4 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TTC28Q96AY4 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TTC28Q96AY4 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TTC28Q96AY4 AC096582.2-201ENST00000510860 516 ntBASIC19.29■□□□□ 0.68
TTC28Q96AY4 RNA5SP416-201ENST00000516838 111 ntBASIC19.29■□□□□ 0.68
TTC28Q96AY4 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.29■□□□□ 0.68
TTC28Q96AY4 AC087641.1-201ENST00000557561 1021 ntBASIC19.29■□□□□ 0.68
TTC28Q96AY4 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.29■□□□□ 0.68
TTC28Q96AY4 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TTC28Q96AY4 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.29■□□□□ 0.68
TTC28Q96AY4 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TTC28Q96AY4 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TTC28Q96AY4 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
TTC28Q96AY4 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC19.28■□□□□ 0.68
TTC28Q96AY4 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TTC28Q96AY4 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.28■□□□□ 0.68
TTC28Q96AY4 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms