Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.66■□□□□ 0.74
HLA-CQ95604 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.66■□□□□ 0.74
HLA-CQ95604 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-CQ95604 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-CQ95604 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.65■□□□□ 0.74
HLA-CQ95604 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
HLA-CQ95604 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HLA-CQ95604 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
HLA-CQ95604 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.65■□□□□ 0.74
HLA-CQ95604 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.65■□□□□ 0.74
HLA-CQ95604 UPF3AP3-201ENST00000420996 769 ntBASIC19.65■□□□□ 0.74
HLA-CQ95604 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC19.65■□□□□ 0.74
HLA-CQ95604 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.65■□□□□ 0.74
HLA-CQ95604 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.65■□□□□ 0.74
HLA-CQ95604 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.65■□□□□ 0.74
HLA-CQ95604 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.65■□□□□ 0.74
HLA-CQ95604 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.65■□□□□ 0.74
HLA-CQ95604 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC19.65■□□□□ 0.74
HLA-CQ95604 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.65■□□□□ 0.74
HLA-CQ95604 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.65■□□□□ 0.74
HLA-CQ95604 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
HLA-CQ95604 AC083906.6-201ENST00000641366 219 ntBASIC19.65■□□□□ 0.74
HLA-CQ95604 AC079781.4-201ENST00000641908 219 ntBASIC19.65■□□□□ 0.74
HLA-CQ95604 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.65■□□□□ 0.74
HLA-CQ95604 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.65■□□□□ 0.74
HLA-CQ95604 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.65■□□□□ 0.74
HLA-CQ95604 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-CQ95604 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
HLA-CQ95604 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HLA-CQ95604 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.64■□□□□ 0.74
HLA-CQ95604 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
HLA-CQ95604 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
HLA-CQ95604 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.64■□□□□ 0.73
HLA-CQ95604 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-CQ95604 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
HLA-CQ95604 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.64■□□□□ 0.73
HLA-CQ95604 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.64■□□□□ 0.73
HLA-CQ95604 AL591684.3-201ENST00000605187 298 ntBASIC19.64■□□□□ 0.73
HLA-CQ95604 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-CQ95604 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
HLA-CQ95604 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-CQ95604 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
HLA-CQ95604 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.64■□□□□ 0.73
HLA-CQ95604 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
HLA-CQ95604 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.64■□□□□ 0.73
HLA-CQ95604 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-CQ95604 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
HLA-CQ95604 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-CQ95604 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.63■□□□□ 0.73
HLA-CQ95604 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.63■□□□□ 0.73
HLA-CQ95604 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.63■□□□□ 0.73
HLA-CQ95604 URGCP-206ENST00000446958 365 ntTSL 2 BASIC19.63■□□□□ 0.73
HLA-CQ95604 RN7SL606P-201ENST00000472779 293 ntBASIC19.63■□□□□ 0.73
HLA-CQ95604 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.63■□□□□ 0.73
HLA-CQ95604 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.63■□□□□ 0.73
HLA-CQ95604 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 PGAM5P1-201ENST00000518923 814 ntBASIC19.63■□□□□ 0.73
HLA-CQ95604 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.63■□□□□ 0.73
HLA-CQ95604 AP005901.3-202ENST00000581653 237 ntBASIC19.63■□□□□ 0.73
HLA-CQ95604 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 AL049840.3-201ENST00000602669 611 ntBASIC19.63■□□□□ 0.73
HLA-CQ95604 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-CQ95604 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-CQ95604 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-CQ95604 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-CQ95604 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-CQ95604 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-CQ95604 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-CQ95604 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-CQ95604 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-CQ95604 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms