Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 HLA-B-256ENST00000639848 1089 ntBASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 OR6D1P-202ENST00000641007 5290 ntBASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 ESRRAP1-201ENST00000400596 1257 ntBASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 AC023632.3-201ENST00000521633 145 ntBASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 AC060766.5-201ENST00000590539 871 ntBASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
DEPDC4Q8N2C3 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 ITM2C-210ENST00000620962 501 ntBASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 BICD1-207ENST00000551848 1962 ntBASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.65■□□□□ 0.42
DEPDC4Q8N2C3 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
DEPDC4Q8N2C3 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.64■□□□□ 0.42
DEPDC4Q8N2C3 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.64■□□□□ 0.42
DEPDC4Q8N2C3 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
DEPDC4Q8N2C3 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 AC066615.1-201ENST00000640911 628 ntBASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DEPDC4Q8N2C3 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms