Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
BEST3Q8N1M1 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.63■□□□□ 0.41
BEST3Q8N1M1 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
BEST3Q8N1M1 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BEST3Q8N1M1 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.63■□□□□ 0.41
BEST3Q8N1M1 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BEST3Q8N1M1 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 BX664615.1-201ENST00000443558 458 ntBASIC17.62■□□□□ 0.41
BEST3Q8N1M1 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.62■□□□□ 0.41
BEST3Q8N1M1 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 AL138966.2-201ENST00000621997 464 ntBASIC17.61■□□□□ 0.41
BEST3Q8N1M1 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BEST3Q8N1M1 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 AK4P3-201ENST00000418260 669 ntBASIC17.6■□□□□ 0.41
BEST3Q8N1M1 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.6■□□□□ 0.41
BEST3Q8N1M1 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 NTF6B-201ENST00000591913 560 ntBASIC17.6■□□□□ 0.41
BEST3Q8N1M1 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
BEST3Q8N1M1 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 SDHAP1-207ENST00000440850 2000 ntBASIC17.59■□□□□ 0.41
BEST3Q8N1M1 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms