Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
NUP54Q7Z3B4 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
NUP54Q7Z3B4 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.58■□□□□ 0.41
NUP54Q7Z3B4 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
NUP54Q7Z3B4 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
NUP54Q7Z3B4 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.58■□□□□ 0.41
NUP54Q7Z3B4 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
NUP54Q7Z3B4 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 BX088651.1-201ENST00000540551 451 ntBASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 FITM1-202ENST00000559294 800 ntBASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 AP005242.2-201ENST00000580065 1175 ntBASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 AP000525.1-201ENST00000608286 694 ntBASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
NUP54Q7Z3B4 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 KRT8P11-201ENST00000409686 1436 ntBASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 AC096733.2-201ENST00000609937 1394 ntBASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 AC090340.1-201ENST00000620778 4980 ntBASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 MMP23A-201ENST00000234610 1017 ntBASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 CRYGFP-201ENST00000418459 633 ntBASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 CKBP1-201ENST00000565489 1086 ntBASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP54Q7Z3B4 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 MIR1238-201ENST00000408483 83 ntBASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
NUP54Q7Z3B4 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
NUP54Q7Z3B4 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NUP54Q7Z3B4 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
NUP54Q7Z3B4 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NUP54Q7Z3B4 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
NUP54Q7Z3B4 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
NUP54Q7Z3B4 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms