Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
COL7A1Q02388 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL7A1Q02388 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL7A1Q02388 AC018712.1-201ENST00000455767 687 ntBASIC13.61□□□□□ -0.23
COL7A1Q02388 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC13.61□□□□□ -0.23
COL7A1Q02388 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC13.61□□□□□ -0.23
COL7A1Q02388 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
COL7A1Q02388 Z69720.1-201ENST00000601483 472 ntBASIC13.61□□□□□ -0.23
COL7A1Q02388 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL7A1Q02388 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL7A1Q02388 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC13.61□□□□□ -0.23
COL7A1Q02388 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC13.61□□□□□ -0.23
COL7A1Q02388 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL7A1Q02388 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
COL7A1Q02388 LBH-204ENST00000406087 559 ntTSL 4 BASIC13.6□□□□□ -0.23
COL7A1Q02388 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC13.6□□□□□ -0.23
COL7A1Q02388 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC13.6□□□□□ -0.23
COL7A1Q02388 CDV3-207ENST00000508481 661 ntTSL 3 BASIC13.6□□□□□ -0.23
COL7A1Q02388 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC13.6□□□□□ -0.23
COL7A1Q02388 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC13.6□□□□□ -0.23
COL7A1Q02388 AL691403.2-201ENST00000618460 490 ntBASIC13.6□□□□□ -0.23
COL7A1Q02388 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC13.6□□□□□ -0.23
COL7A1Q02388 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
COL7A1Q02388 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
COL7A1Q02388 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 AC104417.2-201ENST00000562989 1793 ntBASIC13.6□□□□□ -0.23
COL7A1Q02388 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
COL7A1Q02388 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
COL7A1Q02388 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
COL7A1Q02388 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
COL7A1Q02388 MIR7706-201ENST00000613747 67 ntBASIC13.6□□□□□ -0.23
COL7A1Q02388 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC13.6□□□□□ -0.23
COL7A1Q02388 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC13.6□□□□□ -0.23
COL7A1Q02388 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC13.6□□□□□ -0.23
COL7A1Q02388 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.6□□□□□ -0.23
COL7A1Q02388 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC13.6□□□□□ -0.23
COL7A1Q02388 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC13.6□□□□□ -0.23
COL7A1Q02388 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL7A1Q02388 GOLGA6L5P-202ENST00000515341 1828 ntBASIC13.59□□□□□ -0.23
COL7A1Q02388 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL7A1Q02388 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
COL7A1Q02388 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL7A1Q02388 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
COL7A1Q02388 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL7A1Q02388 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
COL7A1Q02388 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL7A1Q02388 HNRNPA1P28-201ENST00000424481 961 ntBASIC13.59□□□□□ -0.23
COL7A1Q02388 KRT18P23-201ENST00000435622 1283 ntBASIC13.59□□□□□ -0.23
COL7A1Q02388 MOK-208ENST00000519058 917 ntTSL 2 BASIC13.59□□□□□ -0.23
COL7A1Q02388 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC13.59□□□□□ -0.23
COL7A1Q02388 AC140113.2-201ENST00000604370 208 ntBASIC13.59□□□□□ -0.23
COL7A1Q02388 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL7A1Q02388 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC13.59□□□□□ -0.23
COL7A1Q02388 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC13.59□□□□□ -0.23
COL7A1Q02388 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC13.59□□□□□ -0.23
COL7A1Q02388 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC13.59□□□□□ -0.23
COL7A1Q02388 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL7A1Q02388 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
COL7A1Q02388 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC13.59□□□□□ -0.23
COL7A1Q02388 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC13.59□□□□□ -0.23
COL7A1Q02388 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC13.59□□□□□ -0.23
COL7A1Q02388 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL7A1Q02388 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL7A1Q02388 GGCT-205ENST00000409436 954 ntTSL 3 BASIC13.59□□□□□ -0.23
COL7A1Q02388 AC091607.1-201ENST00000490318 1060 ntBASIC13.59□□□□□ -0.23
COL7A1Q02388 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC13.59□□□□□ -0.23
COL7A1Q02388 AC106730.1-201ENST00000566722 1090 ntBASIC13.59□□□□□ -0.23
COL7A1Q02388 CCNC-219ENST00000627680 896 ntTSL 5 BASIC13.59□□□□□ -0.23
COL7A1Q02388 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
COL7A1Q02388 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
COL7A1Q02388 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC13.58□□□□□ -0.23
COL7A1Q02388 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC13.58□□□□□ -0.23
COL7A1Q02388 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
COL7A1Q02388 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
COL7A1Q02388 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC13.58□□□□□ -0.23
COL7A1Q02388 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms