Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK1P53667 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK1P53667 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMK1P53667 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK1P53667 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK1P53667 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK1P53667 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK1P53667 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK1P53667 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
LIMK1P53667 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.77■□□□□ 0.6
LIMK1P53667 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMK1P53667 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK1P53667 AL121772.3-201ENST00000610840 674 ntBASIC18.77■□□□□ 0.6
LIMK1P53667 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.77■□□□□ 0.6
LIMK1P53667 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
LIMK1P53667 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.77■□□□□ 0.6
LIMK1P53667 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK1P53667 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK1P53667 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK1P53667 TMEM179-206ENST00000616017 1645 ntBASIC18.77■□□□□ 0.6
LIMK1P53667 PLK5-205ENST00000642079 1969 ntBASIC18.77■□□□□ 0.59
LIMK1P53667 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
LIMK1P53667 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
LIMK1P53667 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.77■□□□□ 0.59
LIMK1P53667 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK1P53667 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK1P53667 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK1P53667 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMK1P53667 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK1P53667 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK1P53667 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK1P53667 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK1P53667 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK1P53667 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK1P53667 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK1P53667 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK1P53667 RASA4DP-201ENST00000460726 1199 ntBASIC18.76■□□□□ 0.59
LIMK1P53667 AP002414.4-201ENST00000589764 1148 ntBASIC18.76■□□□□ 0.59
LIMK1P53667 LINC01711-201ENST00000598340 967 ntBASIC18.76■□□□□ 0.59
LIMK1P53667 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.76■□□□□ 0.59
LIMK1P53667 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMK1P53667 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.76■□□□□ 0.59
LIMK1P53667 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK1P53667 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK1P53667 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK1P53667 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
LIMK1P53667 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMK1P53667 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK1P53667 AL162377.1-201ENST00000618844 1793 ntBASIC18.76■□□□□ 0.59
LIMK1P53667 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMK1P53667 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMK1P53667 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMK1P53667 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIMK1P53667 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
LIMK1P53667 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMK1P53667 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMK1P53667 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.75■□□□□ 0.59
LIMK1P53667 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
LIMK1P53667 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIMK1P53667 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMK1P53667 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMK1P53667 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIMK1P53667 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.75■□□□□ 0.59
LIMK1P53667 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.75■□□□□ 0.59
LIMK1P53667 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMK1P53667 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
LIMK1P53667 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
LIMK1P53667 SLC25A6P4-201ENST00000586535 553 ntBASIC18.75■□□□□ 0.59
LIMK1P53667 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.75■□□□□ 0.59
LIMK1P53667 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIMK1P53667 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMK1P53667 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.75■□□□□ 0.59
LIMK1P53667 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIMK1P53667 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMK1P53667 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
LIMK1P53667 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMK1P53667 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMK1P53667 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMK1P53667 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMK1P53667 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMK1P53667 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMK1P53667 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMK1P53667 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.74■□□□□ 0.59
LIMK1P53667 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMK1P53667 AC079781.3-201ENST00000449110 356 ntBASIC18.74■□□□□ 0.59
LIMK1P53667 KRT8P26-201ENST00000534154 1276 ntBASIC18.74■□□□□ 0.59
LIMK1P53667 AC091304.2-201ENST00000564639 760 ntBASIC18.74■□□□□ 0.59
LIMK1P53667 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.74■□□□□ 0.59
LIMK1P53667 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMK1P53667 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.74■□□□□ 0.59
LIMK1P53667 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMK1P53667 PCDHAC2-203ENST00000615316 3011 ntBASIC18.74■□□□□ 0.59
LIMK1P53667 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMK1P53667 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.74■□□□□ 0.59
LIMK1P53667 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMK1P53667 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMK1P53667 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMK1P53667 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.74■□□□□ 0.59
LIMK1P53667 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
LIMK1P53667 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms