Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A4P53420 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A4P53420 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A4P53420 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A4P53420 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.36■□□□□ 0.85
COL4A4P53420 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A4P53420 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A4P53420 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A4P53420 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A4P53420 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
COL4A4P53420 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC20.35■□□□□ 0.85
COL4A4P53420 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A4P53420 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A4P53420 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A4P53420 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A4P53420 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A4P53420 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL4A4P53420 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A4P53420 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A4P53420 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A4P53420 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A4P53420 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A4P53420 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A4P53420 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A4P53420 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A4P53420 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.35■□□□□ 0.85
COL4A4P53420 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A4P53420 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
COL4A4P53420 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A4P53420 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A4P53420 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A4P53420 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A4P53420 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.34■□□□□ 0.85
COL4A4P53420 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A4P53420 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A4P53420 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A4P53420 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A4P53420 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A4P53420 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
COL4A4P53420 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A4P53420 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A4P53420 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A4P53420 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.34■□□□□ 0.85
COL4A4P53420 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A4P53420 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A4P53420 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
COL4A4P53420 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.34■□□□□ 0.85
COL4A4P53420 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A4P53420 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A4P53420 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.34■□□□□ 0.85
COL4A4P53420 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A4P53420 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A4P53420 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
COL4A4P53420 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A4P53420 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.33■□□□□ 0.85
COL4A4P53420 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A4P53420 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A4P53420 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A4P53420 MRPL3P1-201ENST00000400109 1033 ntBASIC20.33■□□□□ 0.85
COL4A4P53420 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
COL4A4P53420 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.33■□□□□ 0.85
COL4A4P53420 AP002469.2-201ENST00000531724 424 ntBASIC20.33■□□□□ 0.85
COL4A4P53420 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.33■□□□□ 0.85
COL4A4P53420 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A4P53420 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A4P53420 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A4P53420 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.32■□□□□ 0.84
COL4A4P53420 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
COL4A4P53420 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A4P53420 TSPY19P-201ENST00000418461 509 ntBASIC20.32■□□□□ 0.84
COL4A4P53420 TSPY18P-201ENST00000441642 509 ntBASIC20.32■□□□□ 0.84
COL4A4P53420 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A4P53420 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.32■□□□□ 0.84
COL4A4P53420 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC20.32■□□□□ 0.84
COL4A4P53420 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A4P53420 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A4P53420 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
COL4A4P53420 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A4P53420 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A4P53420 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A4P53420 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A4P53420 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A4P53420 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A4P53420 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.32■□□□□ 0.84
COL4A4P53420 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
COL4A4P53420 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.32■□□□□ 0.84
COL4A4P53420 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.32■□□□□ 0.84
COL4A4P53420 Z82202.1-201ENST00000623446 1880 ntBASIC20.32■□□□□ 0.84
COL4A4P53420 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A4P53420 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A4P53420 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A4P53420 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A4P53420 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.32■□□□□ 0.84
COL4A4P53420 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A4P53420 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A4P53420 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A4P53420 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.32■□□□□ 0.84
COL4A4P53420 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A4P53420 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A4P53420 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms