Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.99■■□□□ 1.11
CTCFP49711 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CTCFP49711 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC21.99■■□□□ 1.11
CTCFP49711 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC21.99■■□□□ 1.11
CTCFP49711 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CTCFP49711 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.98■■□□□ 1.11
CTCFP49711 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.98■■□□□ 1.11
CTCFP49711 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CTCFP49711 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
CTCFP49711 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.98■■□□□ 1.11
CTCFP49711 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CTCFP49711 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC21.98■■□□□ 1.11
CTCFP49711 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
CTCFP49711 FIS1-203ENST00000442303 631 ntTSL 3 BASIC21.98■■□□□ 1.11
CTCFP49711 DNAJB3-201ENST00000446806 729 ntBASIC21.98■■□□□ 1.11
CTCFP49711 PRKN-208ENST00000610470 531 ntTSL 2 BASIC21.98■■□□□ 1.11
CTCFP49711 PRKN-209ENST00000612485 225 ntTSL 5 BASIC21.98■■□□□ 1.11
CTCFP49711 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
CTCFP49711 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CTCFP49711 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
CTCFP49711 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CTCFP49711 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CTCFP49711 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.97■■□□□ 1.11
CTCFP49711 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.97■■□□□ 1.11
CTCFP49711 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
CTCFP49711 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC21.97■■□□□ 1.11
CTCFP49711 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CTCFP49711 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.97■■□□□ 1.11
CTCFP49711 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.97■■□□□ 1.11
CTCFP49711 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
CTCFP49711 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CTCFP49711 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CTCFP49711 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
CTCFP49711 HLA-J-202ENST00000469281 1241 ntBASIC21.97■■□□□ 1.11
CTCFP49711 CYMP-203ENST00000474680 1263 ntBASIC21.97■■□□□ 1.11
CTCFP49711 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC21.97■■□□□ 1.11
CTCFP49711 IRF8-202ENST00000562492 946 ntTSL 3 BASIC21.97■■□□□ 1.11
CTCFP49711 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC21.97■■□□□ 1.11
CTCFP49711 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CTCFP49711 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CTCFP49711 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
CTCFP49711 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
CTCFP49711 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CTCFP49711 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CTCFP49711 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.97■■□□□ 1.11
CTCFP49711 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.97■■□□□ 1.11
CTCFP49711 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.97■■□□□ 1.11
CTCFP49711 KRT8P41-201ENST00000533985 1514 ntBASIC21.96■■□□□ 1.11
CTCFP49711 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC21.96■■□□□ 1.11
CTCFP49711 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CTCFP49711 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CTCFP49711 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC21.96■■□□□ 1.11
CTCFP49711 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.96■■□□□ 1.11
CTCFP49711 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CTCFP49711 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CTCFP49711 NUS1P2-201ENST00000417358 873 ntBASIC21.96■■□□□ 1.11
CTCFP49711 BET1L-206ENST00000486280 665 ntTSL 3 BASIC21.96■■□□□ 1.11
CTCFP49711 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC21.96■■□□□ 1.11
CTCFP49711 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC21.96■■□□□ 1.11
CTCFP49711 MIR7706-201ENST00000613747 67 ntBASIC21.96■■□□□ 1.11
CTCFP49711 CCNC-219ENST00000627680 896 ntTSL 5 BASIC21.96■■□□□ 1.11
CTCFP49711 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
CTCFP49711 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CTCFP49711 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.96■■□□□ 1.11
CTCFP49711 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CTCFP49711 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
CTCFP49711 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.96■■□□□ 1.11
CTCFP49711 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
CTCFP49711 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
CTCFP49711 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.96■■□□□ 1.11
CTCFP49711 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CTCFP49711 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
CTCFP49711 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.11
CTCFP49711 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
CTCFP49711 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.95■■□□□ 1.1
CTCFP49711 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.95■■□□□ 1.1
CTCFP49711 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CTCFP49711 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CTCFP49711 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CTCFP49711 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC21.95■■□□□ 1.1
CTCFP49711 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CTCFP49711 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CTCFP49711 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CTCFP49711 SCARNA2-201ENST00000458748 420 ntBASIC21.95■■□□□ 1.1
CTCFP49711 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC21.95■■□□□ 1.1
CTCFP49711 AL049840.3-201ENST00000602669 611 ntBASIC21.95■■□□□ 1.1
CTCFP49711 AL356488.2-201ENST00000602755 427 ntBASIC21.95■■□□□ 1.1
CTCFP49711 IGHV3OR16-7-201ENST00000604106 360 ntBASIC21.95■■□□□ 1.1
CTCFP49711 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC21.95■■□□□ 1.1
CTCFP49711 FAM197Y3-203ENST00000618346 717 ntBASIC21.95■■□□□ 1.1
CTCFP49711 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC21.95■■□□□ 1.1
CTCFP49711 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.95■■□□□ 1.1
CTCFP49711 KRT18P28-201ENST00000453838 1332 ntBASIC21.95■■□□□ 1.1
CTCFP49711 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CTCFP49711 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC21.95■■□□□ 1.1
CTCFP49711 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CTCFP49711 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CTCFP49711 AL391807.1-203ENST00000604392 2365 ntBASIC21.95■■□□□ 1.1
CTCFP49711 AF106564.1-201ENST00000607058 2553 ntBASIC21.94■■□□□ 1.1
CTCFP49711 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms