Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SMARCA1P28370 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SMARCA1P28370 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMARCA1P28370 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC21.81■■□□□ 1.08
SMARCA1P28370 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SMARCA1P28370 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC21.81■■□□□ 1.08
SMARCA1P28370 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
SMARCA1P28370 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMARCA1P28370 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMARCA1P28370 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMARCA1P28370 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMARCA1P28370 AL137013.1-201ENST00000432946 1228 ntBASIC21.81■■□□□ 1.08
SMARCA1P28370 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.81■■□□□ 1.08
SMARCA1P28370 AC068587.9-201ENST00000641814 219 ntBASIC21.81■■□□□ 1.08
SMARCA1P28370 AC092865.7-201ENST00000641832 219 ntBASIC21.81■■□□□ 1.08
SMARCA1P28370 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMARCA1P28370 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SMARCA1P28370 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
SMARCA1P28370 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMARCA1P28370 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMARCA1P28370 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.81■■□□□ 1.08
SMARCA1P28370 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
SMARCA1P28370 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCA1P28370 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCA1P28370 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCA1P28370 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCA1P28370 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
SMARCA1P28370 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.8■■□□□ 1.08
SMARCA1P28370 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.8■■□□□ 1.08
SMARCA1P28370 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SMARCA1P28370 AC005521.1-201ENST00000393351 872 ntBASIC21.8■■□□□ 1.08
SMARCA1P28370 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.8■■□□□ 1.08
SMARCA1P28370 AC010203.1-204ENST00000548782 407 ntBASIC21.8■■□□□ 1.08
SMARCA1P28370 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCA1P28370 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCA1P28370 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
SMARCA1P28370 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21.8■■□□□ 1.08
SMARCA1P28370 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.8■■□□□ 1.08
SMARCA1P28370 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCA1P28370 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
SMARCA1P28370 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
SMARCA1P28370 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC21.8■■□□□ 1.08
SMARCA1P28370 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
SMARCA1P28370 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA1P28370 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA1P28370 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC21.79■■□□□ 1.08
SMARCA1P28370 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
SMARCA1P28370 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.79■■□□□ 1.08
SMARCA1P28370 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
SMARCA1P28370 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA1P28370 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA1P28370 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA1P28370 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA1P28370 RCN1P1-201ENST00000400413 996 ntBASIC21.79■■□□□ 1.08
SMARCA1P28370 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.79■■□□□ 1.08
SMARCA1P28370 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.79■■□□□ 1.08
SMARCA1P28370 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA1P28370 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC21.79■■□□□ 1.08
SMARCA1P28370 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SMARCA1P28370 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.79■■□□□ 1.08
SMARCA1P28370 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA1P28370 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
SMARCA1P28370 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.79■■□□□ 1.08
SMARCA1P28370 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.79■■□□□ 1.08
SMARCA1P28370 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
SMARCA1P28370 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA1P28370 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA1P28370 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA1P28370 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA1P28370 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA1P28370 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
SMARCA1P28370 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
SMARCA1P28370 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA1P28370 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA1P28370 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA1P28370 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.78■■□□□ 1.08
SMARCA1P28370 MCCD1P1-208ENST00000445732 328 ntBASIC21.78■■□□□ 1.08
SMARCA1P28370 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.78■■□□□ 1.08
SMARCA1P28370 CR769767.2-201ENST00000622735 460 ntBASIC21.78■■□□□ 1.08
SMARCA1P28370 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA1P28370 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA1P28370 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA1P28370 KRT8P45-201ENST00000414328 1447 ntBASIC21.78■■□□□ 1.08
SMARCA1P28370 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA1P28370 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA1P28370 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC21.78■■□□□ 1.08
SMARCA1P28370 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
SMARCA1P28370 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA1P28370 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.77■■□□□ 1.08
SMARCA1P28370 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
SMARCA1P28370 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC21.77■■□□□ 1.08
SMARCA1P28370 RCC2P3-201ENST00000418112 1537 ntBASIC21.77■■□□□ 1.08
SMARCA1P28370 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA1P28370 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA1P28370 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA1P28370 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA1P28370 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA1P28370 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA1P28370 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.77■■□□□ 1.08
SMARCA1P28370 LIN28AP1-201ENST00000429574 405 ntBASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms