Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
COL5A1P20908 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.25■□□□□ 0.51
COL5A1P20908 AL391807.1-203ENST00000604392 2365 ntBASIC18.25■□□□□ 0.51
COL5A1P20908 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
COL5A1P20908 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.25■□□□□ 0.51
COL5A1P20908 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.25■□□□□ 0.51
COL5A1P20908 MCCD1P1-208ENST00000445732 328 ntBASIC18.25■□□□□ 0.51
COL5A1P20908 AC079781.3-201ENST00000449110 356 ntBASIC18.25■□□□□ 0.51
COL5A1P20908 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A1P20908 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
COL5A1P20908 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A1P20908 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A1P20908 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A1P20908 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
COL5A1P20908 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A1P20908 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A1P20908 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.24■□□□□ 0.51
COL5A1P20908 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A1P20908 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A1P20908 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A1P20908 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A1P20908 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.24■□□□□ 0.51
COL5A1P20908 NUS1P1-201ENST00000446295 882 ntBASIC18.24■□□□□ 0.51
COL5A1P20908 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
COL5A1P20908 EMBP1-201ENST00000458200 901 ntBASIC18.24■□□□□ 0.51
COL5A1P20908 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.24■□□□□ 0.51
COL5A1P20908 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
COL5A1P20908 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
COL5A1P20908 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A1P20908 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A1P20908 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A1P20908 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.24■□□□□ 0.51
COL5A1P20908 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
COL5A1P20908 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A1P20908 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A1P20908 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A1P20908 TSPY19P-201ENST00000418461 509 ntBASIC18.23■□□□□ 0.51
COL5A1P20908 TSPY18P-201ENST00000441642 509 ntBASIC18.23■□□□□ 0.51
COL5A1P20908 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.23■□□□□ 0.51
COL5A1P20908 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A1P20908 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.23■□□□□ 0.51
COL5A1P20908 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A1P20908 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A1P20908 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A1P20908 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A1P20908 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A1P20908 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A1P20908 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A1P20908 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A1P20908 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A1P20908 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.23■□□□□ 0.51
COL5A1P20908 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A1P20908 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A1P20908 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.23■□□□□ 0.51
COL5A1P20908 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A1P20908 AL023284.2-201ENST00000405850 579 ntBASIC18.23■□□□□ 0.51
COL5A1P20908 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.23■□□□□ 0.51
COL5A1P20908 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.23■□□□□ 0.51
COL5A1P20908 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A1P20908 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.23■□□□□ 0.51
COL5A1P20908 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.23■□□□□ 0.51
COL5A1P20908 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A1P20908 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A1P20908 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A1P20908 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A1P20908 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
COL5A1P20908 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A1P20908 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A1P20908 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.22■□□□□ 0.51
COL5A1P20908 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A1P20908 MIR662-201ENST00000384847 95 ntBASIC18.22■□□□□ 0.51
COL5A1P20908 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
COL5A1P20908 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A1P20908 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.22■□□□□ 0.51
COL5A1P20908 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.22■□□□□ 0.51
COL5A1P20908 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A1P20908 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A1P20908 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
COL5A1P20908 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.22■□□□□ 0.51
COL5A1P20908 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A1P20908 AC112907.3-201ENST00000577781 2400 ntBASIC18.22■□□□□ 0.51
COL5A1P20908 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.22■□□□□ 0.51
COL5A1P20908 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A1P20908 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms