Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.56■□□□□ 0.56
HOXC4P09017 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
HOXC4P09017 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
HOXC4P09017 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HOXC4P09017 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.56■□□□□ 0.56
HOXC4P09017 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.56■□□□□ 0.56
HOXC4P09017 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.56■□□□□ 0.56
HOXC4P09017 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.56■□□□□ 0.56
HOXC4P09017 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.56■□□□□ 0.56
HOXC4P09017 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.56■□□□□ 0.56
HOXC4P09017 GCSHP2-201ENST00000560971 527 ntBASIC18.56■□□□□ 0.56
HOXC4P09017 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
HOXC4P09017 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.56■□□□□ 0.56
HOXC4P09017 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.56■□□□□ 0.56
HOXC4P09017 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
HOXC4P09017 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.55■□□□□ 0.56
HOXC4P09017 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC4P09017 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC4P09017 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC4P09017 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.55■□□□□ 0.56
HOXC4P09017 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.55■□□□□ 0.56
HOXC4P09017 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
HOXC4P09017 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC4P09017 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
HOXC4P09017 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC4P09017 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC4P09017 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.55■□□□□ 0.56
HOXC4P09017 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.55■□□□□ 0.56
HOXC4P09017 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC4P09017 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.55■□□□□ 0.56
HOXC4P09017 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC4P09017 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.55■□□□□ 0.56
HOXC4P09017 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.55■□□□□ 0.56
HOXC4P09017 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.55■□□□□ 0.56
HOXC4P09017 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC4P09017 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.55■□□□□ 0.56
HOXC4P09017 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.55■□□□□ 0.56
HOXC4P09017 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.55■□□□□ 0.56
HOXC4P09017 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
HOXC4P09017 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
HOXC4P09017 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC4P09017 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
HOXC4P09017 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC4P09017 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
HOXC4P09017 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.55■□□□□ 0.56
HOXC4P09017 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.55■□□□□ 0.56
HOXC4P09017 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC4P09017 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC4P09017 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC4P09017 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC4P09017 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC4P09017 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.54■□□□□ 0.56
HOXC4P09017 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC4P09017 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC4P09017 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC4P09017 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.54■□□□□ 0.56
HOXC4P09017 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.54■□□□□ 0.56
HOXC4P09017 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
HOXC4P09017 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.54■□□□□ 0.56
HOXC4P09017 AL121956.5-201ENST00000625261 221 ntBASIC18.54■□□□□ 0.56
HOXC4P09017 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.54■□□□□ 0.56
HOXC4P09017 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC4P09017 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC4P09017 KRT8P7-201ENST00000533003 1432 ntBASIC18.54■□□□□ 0.56
HOXC4P09017 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.54■□□□□ 0.56
HOXC4P09017 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
HOXC4P09017 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
HOXC4P09017 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC4P09017 PCDHAC2-203ENST00000615316 3011 ntBASIC18.54■□□□□ 0.56
HOXC4P09017 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC4P09017 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC4P09017 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC4P09017 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
HOXC4P09017 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.53■□□□□ 0.56
HOXC4P09017 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC4P09017 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
HOXC4P09017 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.53■□□□□ 0.56
HOXC4P09017 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
HOXC4P09017 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.53■□□□□ 0.56
HOXC4P09017 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC4P09017 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC4P09017 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC4P09017 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC4P09017 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms