Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
RNF40O75150 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF40O75150 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF40O75150 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF40O75150 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
RNF40O75150 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.48■□□□□ 0.87
RNF40O75150 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF40O75150 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RNF40O75150 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.48■□□□□ 0.87
RNF40O75150 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF40O75150 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF40O75150 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF40O75150 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
RNF40O75150 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF40O75150 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF40O75150 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF40O75150 AP003071.4-201ENST00000562276 1284 ntBASIC20.48■□□□□ 0.87
RNF40O75150 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.48■□□□□ 0.87
RNF40O75150 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.48■□□□□ 0.87
RNF40O75150 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.48■□□□□ 0.87
RNF40O75150 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF40O75150 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF40O75150 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.48■□□□□ 0.87
RNF40O75150 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF40O75150 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.48■□□□□ 0.87
RNF40O75150 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF40O75150 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RNF40O75150 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF40O75150 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF40O75150 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.48■□□□□ 0.87
RNF40O75150 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.48■□□□□ 0.87
RNF40O75150 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF40O75150 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
RNF40O75150 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNF40O75150 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
RNF40O75150 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF40O75150 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.47■□□□□ 0.87
RNF40O75150 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF40O75150 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
RNF40O75150 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF40O75150 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF40O75150 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
RNF40O75150 RCN1P1-201ENST00000400413 996 ntBASIC20.47■□□□□ 0.87
RNF40O75150 AC023632.3-201ENST00000521633 145 ntBASIC20.47■□□□□ 0.87
RNF40O75150 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
RNF40O75150 AF186192.3-201ENST00000583427 947 ntBASIC20.47■□□□□ 0.87
RNF40O75150 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF40O75150 MIR2861-201ENST00000636310 90 ntBASIC20.47■□□□□ 0.87
RNF40O75150 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF40O75150 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF40O75150 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF40O75150 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF40O75150 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
RNF40O75150 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF40O75150 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNF40O75150 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF40O75150 AC020916.1-201ENST00000587762 1774 ntBASIC20.46■□□□□ 0.87
RNF40O75150 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RNF40O75150 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
RNF40O75150 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC20.46■□□□□ 0.87
RNF40O75150 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF40O75150 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF40O75150 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF40O75150 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.46■□□□□ 0.87
RNF40O75150 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF40O75150 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.46■□□□□ 0.87
RNF40O75150 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.46■□□□□ 0.87
RNF40O75150 NBPF21P-201ENST00000425093 1451 ntBASIC20.46■□□□□ 0.87
RNF40O75150 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF40O75150 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.46■□□□□ 0.87
RNF40O75150 AL355355.2-201ENST00000442321 338 ntBASIC20.46■□□□□ 0.87
RNF40O75150 KRT16P5-201ENST00000455284 522 ntBASIC20.46■□□□□ 0.87
RNF40O75150 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.46■□□□□ 0.87
RNF40O75150 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.46■□□□□ 0.87
RNF40O75150 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.46■□□□□ 0.87
RNF40O75150 AL353708.3-201ENST00000610272 989 ntBASIC20.46■□□□□ 0.87
RNF40O75150 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RNF40O75150 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.46■□□□□ 0.87
RNF40O75150 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.46■□□□□ 0.87
RNF40O75150 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF40O75150 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF40O75150 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF40O75150 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF40O75150 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
RNF40O75150 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF40O75150 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.46■□□□□ 0.87
RNF40O75150 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF40O75150 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF40O75150 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.45■□□□□ 0.86
RNF40O75150 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
RNF40O75150 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
RNF40O75150 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF40O75150 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF40O75150 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF40O75150 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.45■□□□□ 0.86
RNF40O75150 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF40O75150 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF40O75150 CD177P1-201ENST00000606252 935 ntBASIC20.45■□□□□ 0.86
RNF40O75150 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
RNF40O75150 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms