Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.69■□□□□ 0.42
PRKNO60260 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PRKNO60260 TSPY14P-201ENST00000303979 915 ntBASIC17.69■□□□□ 0.42
PRKNO60260 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PRKNO60260 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PRKNO60260 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PRKNO60260 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.69■□□□□ 0.42
PRKNO60260 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.69■□□□□ 0.42
PRKNO60260 C2orf69P3-201ENST00000565542 1120 ntBASIC17.69■□□□□ 0.42
PRKNO60260 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.69■□□□□ 0.42
PRKNO60260 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.69■□□□□ 0.42
PRKNO60260 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PRKNO60260 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PRKNO60260 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.69■□□□□ 0.42
PRKNO60260 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PRKNO60260 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PRKNO60260 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.69■□□□□ 0.42
PRKNO60260 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PRKNO60260 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PRKNO60260 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PRKNO60260 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
PRKNO60260 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PRKNO60260 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PRKNO60260 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PRKNO60260 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PRKNO60260 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.69■□□□□ 0.42
PRKNO60260 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.69■□□□□ 0.42
PRKNO60260 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
PRKNO60260 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.68■□□□□ 0.42
PRKNO60260 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
PRKNO60260 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.68■□□□□ 0.42
PRKNO60260 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.68■□□□□ 0.42
PRKNO60260 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 ECEL1P2-202ENST00000465689 757 ntBASIC17.68■□□□□ 0.42
PRKNO60260 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.68■□□□□ 0.42
PRKNO60260 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.68■□□□□ 0.42
PRKNO60260 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.68■□□□□ 0.42
PRKNO60260 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.68■□□□□ 0.42
PRKNO60260 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PRKNO60260 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.68■□□□□ 0.42
PRKNO60260 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PRKNO60260 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PRKNO60260 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
PRKNO60260 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.67■□□□□ 0.42
PRKNO60260 PRSS44-201ENST00000515154 1146 ntBASIC17.67■□□□□ 0.42
PRKNO60260 EGLN1P1-201ENST00000531623 762 ntBASIC17.67■□□□□ 0.42
PRKNO60260 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.67■□□□□ 0.42
PRKNO60260 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.67■□□□□ 0.42
PRKNO60260 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PRKNO60260 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PRKNO60260 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PRKNO60260 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PRKNO60260 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PRKNO60260 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PRKNO60260 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PRKNO60260 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
PRKNO60260 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
PRKNO60260 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PRKNO60260 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PRKNO60260 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKNO60260 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.66■□□□□ 0.42
PRKNO60260 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
PRKNO60260 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKNO60260 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.66■□□□□ 0.42
PRKNO60260 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.66■□□□□ 0.42
PRKNO60260 IRX1P1-201ENST00000438849 1838 ntBASIC17.66■□□□□ 0.42
PRKNO60260 AC141586.3-201ENST00000562166 1838 ntBASIC17.66■□□□□ 0.42
PRKNO60260 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKNO60260 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKNO60260 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PRKNO60260 RCN1P1-201ENST00000400413 996 ntBASIC17.66■□□□□ 0.42
PRKNO60260 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKNO60260 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKNO60260 TSPY21P-201ENST00000433481 731 ntBASIC17.66■□□□□ 0.42
PRKNO60260 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.66■□□□□ 0.42
PRKNO60260 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PRKNO60260 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.66■□□□□ 0.42
PRKNO60260 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKNO60260 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKNO60260 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKNO60260 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKNO60260 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKNO60260 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.66■□□□□ 0.42
PRKNO60260 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms