Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP2AO43633 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP2AO43633 AC007663.1-201ENST00000438948 1240 ntBASIC21.38■■□□□ 1.01
CHMP2AO43633 KRT18P57-201ENST00000443599 1254 ntBASIC21.38■■□□□ 1.01
CHMP2AO43633 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC21.38■■□□□ 1.01
CHMP2AO43633 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC21.38■■□□□ 1.01
CHMP2AO43633 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP2AO43633 AC141586.3-201ENST00000562166 1838 ntBASIC21.38■■□□□ 1.01
CHMP2AO43633 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.38■■□□□ 1.01
CHMP2AO43633 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP2AO43633 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP2AO43633 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP2AO43633 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.37■■□□□ 1.01
CHMP2AO43633 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2AO43633 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2AO43633 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.37■■□□□ 1.01
CHMP2AO43633 IRX1P1-201ENST00000438849 1838 ntBASIC21.37■■□□□ 1.01
CHMP2AO43633 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.37■■□□□ 1.01
CHMP2AO43633 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2AO43633 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.37■■□□□ 1.01
CHMP2AO43633 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.37■■□□□ 1.01
CHMP2AO43633 AC005521.1-201ENST00000393351 872 ntBASIC21.37■■□□□ 1.01
CHMP2AO43633 RCN1P1-201ENST00000400413 996 ntBASIC21.37■■□□□ 1.01
CHMP2AO43633 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.37■■□□□ 1.01
CHMP2AO43633 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.37■■□□□ 1.01
CHMP2AO43633 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.37■■□□□ 1.01
CHMP2AO43633 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
CHMP2AO43633 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
CHMP2AO43633 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2AO43633 AL023803.3-201ENST00000615559 522 ntBASIC21.37■■□□□ 1.01
CHMP2AO43633 AC005332.7-201ENST00000614046 2005 ntBASIC21.37■■□□□ 1.01
CHMP2AO43633 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2AO43633 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2AO43633 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2AO43633 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2AO43633 AC120498.9-201ENST00000339021 3867 ntBASIC21.37■■□□□ 1.01
CHMP2AO43633 AC092338.2-201ENST00000568827 1415 ntBASIC21.37■■□□□ 1.01
CHMP2AO43633 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.37■■□□□ 1.01
CHMP2AO43633 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2AO43633 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.36■■□□□ 1.01
CHMP2AO43633 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.36■■□□□ 1.01
CHMP2AO43633 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2AO43633 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2AO43633 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.36■■□□□ 1.01
CHMP2AO43633 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2AO43633 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2AO43633 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2AO43633 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CHMP2AO43633 AC113347.1-201ENST00000413321 391 ntBASIC21.36■■□□□ 1.01
CHMP2AO43633 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.36■■□□□ 1.01
CHMP2AO43633 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.36■■□□□ 1.01
CHMP2AO43633 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2AO43633 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2AO43633 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2AO43633 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CHMP2AO43633 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CHMP2AO43633 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.36■■□□□ 1.01
CHMP2AO43633 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.36■■□□□ 1.01
CHMP2AO43633 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2AO43633 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CHMP2AO43633 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CHMP2AO43633 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CHMP2AO43633 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.35■■□□□ 1.01
CHMP2AO43633 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC21.35■■□□□ 1.01
CHMP2AO43633 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CHMP2AO43633 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.35■■□□□ 1.01
CHMP2AO43633 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
CHMP2AO43633 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CHMP2AO43633 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC21.35■■□□□ 1.01
CHMP2AO43633 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC21.35■■□□□ 1.01
CHMP2AO43633 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.35■■□□□ 1.01
CHMP2AO43633 CA15P1-201ENST00000481698 905 ntBASIC21.35■■□□□ 1.01
CHMP2AO43633 AP003041.3-201ENST00000527151 707 ntBASIC21.35■■□□□ 1.01
CHMP2AO43633 AC010203.1-204ENST00000548782 407 ntBASIC21.35■■□□□ 1.01
CHMP2AO43633 RN7SL850P-201ENST00000579959 291 ntBASIC21.35■■□□□ 1.01
CHMP2AO43633 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.35■■□□□ 1.01
CHMP2AO43633 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC21.35■■□□□ 1.01
CHMP2AO43633 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CHMP2AO43633 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
CHMP2AO43633 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CHMP2AO43633 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CHMP2AO43633 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CHMP2AO43633 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
CHMP2AO43633 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CHMP2AO43633 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.34■■□□□ 1.01
CHMP2AO43633 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CHMP2AO43633 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CHMP2AO43633 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CHMP2AO43633 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CHMP2AO43633 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
CHMP2AO43633 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CHMP2AO43633 TERF1P1-201ENST00000311003 1181 ntBASIC21.34■■□□□ 1.01
CHMP2AO43633 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CHMP2AO43633 AL137013.1-201ENST00000432946 1228 ntBASIC21.34■■□□□ 1.01
CHMP2AO43633 TSPY17P-201ENST00000450329 467 ntBASIC21.34■■□□□ 1.01
CHMP2AO43633 AL353719.1-201ENST00000566847 864 ntBASIC21.34■■□□□ 1.01
CHMP2AO43633 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.34■■□□□ 1.01
CHMP2AO43633 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
CHMP2AO43633 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CHMP2AO43633 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms