Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 BMP1-204ENST00000397814 836 ntTSL 4 BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 MFSD11-216ENST00000590393 1141 ntBASIC13.91□□□□□ -0.18
SMKR1H3BMG3 AC110285.6-201ENST00000617652 491 ntBASIC13.91□□□□□ -0.18
SMKR1H3BMG3 AC105020.6-201ENST00000621523 1217 ntBASIC13.91□□□□□ -0.18
SMKR1H3BMG3 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SMKR1H3BMG3 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 MYCNOS-205ENST00000641950 531 ntBASIC13.9□□□□□ -0.18
SMKR1H3BMG3 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SMKR1H3BMG3 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC13.9□□□□□ -0.19
SMKR1H3BMG3 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
SMKR1H3BMG3 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 AC008406.3-201ENST00000620001 1374 ntBASIC13.89□□□□□ -0.19
SMKR1H3BMG3 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 MCRIP2P1-201ENST00000394346 511 ntBASIC13.89□□□□□ -0.19
SMKR1H3BMG3 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 AC131212.1-201ENST00000613771 668 ntBASIC13.89□□□□□ -0.19
SMKR1H3BMG3 AC099398.1-201ENST00000567919 2776 ntBASIC13.89□□□□□ -0.19
SMKR1H3BMG3 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SMKR1H3BMG3 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SMKR1H3BMG3 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms