Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A5A8TX70 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A5A8TX70 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A5A8TX70 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A5A8TX70 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A5A8TX70 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A5A8TX70 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
COL6A5A8TX70 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.75□□□□□ -0.05
COL6A5A8TX70 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
COL6A5A8TX70 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC14.75□□□□□ -0.05
COL6A5A8TX70 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC14.75□□□□□ -0.05
COL6A5A8TX70 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC14.75□□□□□ -0.05
COL6A5A8TX70 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A5A8TX70 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC14.74□□□□□ -0.05
COL6A5A8TX70 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A5A8TX70 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A5A8TX70 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A5A8TX70 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.74□□□□□ -0.05
COL6A5A8TX70 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
COL6A5A8TX70 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A5A8TX70 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.74□□□□□ -0.05
COL6A5A8TX70 MIR5100-201ENST00000579544 119 ntBASIC14.74□□□□□ -0.05
COL6A5A8TX70 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A5A8TX70 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC14.74□□□□□ -0.05
COL6A5A8TX70 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
COL6A5A8TX70 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A5A8TX70 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A5A8TX70 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A5A8TX70 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A5A8TX70 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A5A8TX70 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC14.74□□□□□ -0.05
COL6A5A8TX70 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC14.74□□□□□ -0.05
COL6A5A8TX70 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
COL6A5A8TX70 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC14.74□□□□□ -0.05
COL6A5A8TX70 DPP3P2-201ENST00000416030 1696 ntBASIC14.74□□□□□ -0.05
COL6A5A8TX70 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A5A8TX70 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A5A8TX70 RBM17P3-201ENST00000417687 1192 ntBASIC14.74□□□□□ -0.05
COL6A5A8TX70 RBM7-207ENST00000544582 692 ntTSL 3 BASIC14.74□□□□□ -0.05
COL6A5A8TX70 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A5A8TX70 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A5A8TX70 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
COL6A5A8TX70 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A5A8TX70 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
COL6A5A8TX70 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
COL6A5A8TX70 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
COL6A5A8TX70 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A5A8TX70 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A5A8TX70 GRAMD4P1-201ENST00000435181 1110 ntBASIC14.73□□□□□ -0.05
COL6A5A8TX70 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.73□□□□□ -0.05
COL6A5A8TX70 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A5A8TX70 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A5A8TX70 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC14.73□□□□□ -0.05
COL6A5A8TX70 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A5A8TX70 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
COL6A5A8TX70 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC14.73□□□□□ -0.05
COL6A5A8TX70 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC14.73□□□□□ -0.05
COL6A5A8TX70 NUS1P2-201ENST00000417358 873 ntBASIC14.73□□□□□ -0.05
COL6A5A8TX70 POM121L3P-201ENST00000419331 1163 ntBASIC14.73□□□□□ -0.05
COL6A5A8TX70 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC14.73□□□□□ -0.05
COL6A5A8TX70 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC14.73□□□□□ -0.05
COL6A5A8TX70 AC011467.4-201ENST00000594891 528 ntBASIC14.73□□□□□ -0.05
COL6A5A8TX70 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC14.73□□□□□ -0.05
COL6A5A8TX70 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A5A8TX70 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A5A8TX70 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A5A8TX70 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A5A8TX70 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
COL6A5A8TX70 AL024507.2-201ENST00000606070 2574 ntBASIC14.73□□□□□ -0.05
COL6A5A8TX70 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A5A8TX70 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A5A8TX70 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC14.72□□□□□ -0.05
COL6A5A8TX70 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC14.72□□□□□ -0.05
COL6A5A8TX70 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.72□□□□□ -0.05
COL6A5A8TX70 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC14.72□□□□□ -0.05
COL6A5A8TX70 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC14.72□□□□□ -0.05
COL6A5A8TX70 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 SNHG9-202ENST00000564014 471 ntBASIC14.72□□□□□ -0.05
COL6A5A8TX70 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC14.72□□□□□ -0.05
COL6A5A8TX70 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC14.72□□□□□ -0.05
COL6A5A8TX70 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC14.72□□□□□ -0.05
COL6A5A8TX70 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
COL6A5A8TX70 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC14.72□□□□□ -0.05
COL6A5A8TX70 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.72□□□□□ -0.05
COL6A5A8TX70 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC14.72□□□□□ -0.05
COL6A5A8TX70 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.72□□□□□ -0.05
COL6A5A8TX70 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
COL6A5A8TX70 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
COL6A5A8TX70 AC124864.1-201ENST00000623408 392 ntBASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms