Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 AIRN-201ENST00000601203 4374 ntBASIC20.5■□□□□ 0.87
LRRC53A6NM62 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.5■□□□□ 0.87
LRRC53A6NM62 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
LRRC53A6NM62 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 AP003097.1-201ENST00000530657 1135 ntBASIC20.5■□□□□ 0.87
LRRC53A6NM62 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 MTDHP1-201ENST00000605323 784 ntBASIC20.5■□□□□ 0.87
LRRC53A6NM62 AC004264.1-201ENST00000608354 794 ntBASIC20.5■□□□□ 0.87
LRRC53A6NM62 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.5■□□□□ 0.87
LRRC53A6NM62 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
LRRC53A6NM62 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 AC020763.4-201ENST00000623414 4170 ntBASIC20.5■□□□□ 0.87
LRRC53A6NM62 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC53A6NM62 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 RNA5SP413-201ENST00000516373 109 ntBASIC20.49■□□□□ 0.87
LRRC53A6NM62 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRC53A6NM62 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 AL390961.4-201ENST00000623958 2535 ntBASIC20.49■□□□□ 0.87
LRRC53A6NM62 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC53A6NM62 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
LRRC53A6NM62 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC53A6NM62 KRT8P41-201ENST00000533985 1514 ntBASIC20.48■□□□□ 0.87
LRRC53A6NM62 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC53A6NM62 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.48■□□□□ 0.87
LRRC53A6NM62 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC53A6NM62 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC53A6NM62 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.48■□□□□ 0.87
LRRC53A6NM62 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC53A6NM62 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC53A6NM62 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC53A6NM62 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
LRRC53A6NM62 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.48■□□□□ 0.87
LRRC53A6NM62 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.48■□□□□ 0.87
LRRC53A6NM62 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.48■□□□□ 0.87
LRRC53A6NM62 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC53A6NM62 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.48■□□□□ 0.87
LRRC53A6NM62 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC53A6NM62 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC53A6NM62 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.48■□□□□ 0.87
LRRC53A6NM62 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
LRRC53A6NM62 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC53A6NM62 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC53A6NM62 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.48■□□□□ 0.87
LRRC53A6NM62 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.48■□□□□ 0.87
LRRC53A6NM62 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC53A6NM62 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.47■□□□□ 0.87
LRRC53A6NM62 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
LRRC53A6NM62 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.47■□□□□ 0.87
LRRC53A6NM62 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.47■□□□□ 0.87
LRRC53A6NM62 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
LRRC53A6NM62 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
LRRC53A6NM62 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms