Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 AC012615.1-201ENST00000565797 1299 ntBASIC32.96■■■□□ 2.87
CCDC88BA6NC98 IL11-204ENST00000590625 1028 ntTSL 2 BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 HOXB1-202ENST00000577092 1414 ntBASIC32.96■■■□□ 2.87
CCDC88BA6NC98 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC32.96■■■□□ 2.87
CCDC88BA6NC98 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC32.95■■■□□ 2.87
CCDC88BA6NC98 AL109659.2-201ENST00000606809 1674 ntBASIC32.95■■■□□ 2.87
CCDC88BA6NC98 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC32.95■■■□□ 2.87
CCDC88BA6NC98 TOB2P1-201ENST00000469761 992 ntBASIC32.95■■■□□ 2.87
CCDC88BA6NC98 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC32.95■■■□□ 2.87
CCDC88BA6NC98 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC32.95■■■□□ 2.87
CCDC88BA6NC98 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC32.95■■■□□ 2.87
CCDC88BA6NC98 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC32.95■■■□□ 2.87
CCDC88BA6NC98 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC32.95■■■□□ 2.87
CCDC88BA6NC98 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC32.95■■■□□ 2.87
CCDC88BA6NC98 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC32.95■■■□□ 2.87
CCDC88BA6NC98 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC32.95■■■□□ 2.86
CCDC88BA6NC98 UBC-206ENST00000538617 1303 ntTSL 5 BASIC32.95■■■□□ 2.86
CCDC88BA6NC98 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC32.95■■■□□ 2.86
CCDC88BA6NC98 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC32.94■■■□□ 2.86
CCDC88BA6NC98 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC32.94■■■□□ 2.86
CCDC88BA6NC98 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC32.94■■■□□ 2.86
CCDC88BA6NC98 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC32.94■■■□□ 2.86
CCDC88BA6NC98 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
CCDC88BA6NC98 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC32.94■■■□□ 2.86
CCDC88BA6NC98 AC010240.3-201ENST00000607688 395 ntBASIC32.94■■■□□ 2.86
CCDC88BA6NC98 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC32.94■■■□□ 2.86
CCDC88BA6NC98 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
CCDC88BA6NC98 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC32.94■■■□□ 2.86
CCDC88BA6NC98 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
CCDC88BA6NC98 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC32.94■■■□□ 2.86
CCDC88BA6NC98 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 AC104390.1-201ENST00000555663 520 ntBASIC32.93■■■□□ 2.86
CCDC88BA6NC98 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 RCC2P3-201ENST00000418112 1537 ntBASIC32.93■■■□□ 2.86
CCDC88BA6NC98 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 LINC00265-3P-201ENST00000447588 903 ntBASIC32.93■■■□□ 2.86
CCDC88BA6NC98 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 SLC25A6P4-201ENST00000586535 553 ntBASIC32.93■■■□□ 2.86
CCDC88BA6NC98 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC32.93■■■□□ 2.86
CCDC88BA6NC98 AL390719.2-201ENST00000606993 987 ntBASIC32.93■■■□□ 2.86
CCDC88BA6NC98 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
CCDC88BA6NC98 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC32.92■■■□□ 2.86
CCDC88BA6NC98 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC32.92■■■□□ 2.86
CCDC88BA6NC98 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
CCDC88BA6NC98 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC32.92■■■□□ 2.86
CCDC88BA6NC98 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC32.92■■■□□ 2.86
CCDC88BA6NC98 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC32.92■■■□□ 2.86
CCDC88BA6NC98 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC32.92■■■□□ 2.86
CCDC88BA6NC98 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC32.91■■■□□ 2.86
CCDC88BA6NC98 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
CCDC88BA6NC98 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC32.91■■■□□ 2.86
CCDC88BA6NC98 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC32.91■■■□□ 2.86
CCDC88BA6NC98 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC32.91■■■□□ 2.86
CCDC88BA6NC98 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC32.91■■■□□ 2.86
CCDC88BA6NC98 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC32.91■■■□□ 2.86
CCDC88BA6NC98 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC32.91■■■□□ 2.86
CCDC88BA6NC98 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
CCDC88BA6NC98 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC32.9■■■□□ 2.86
CCDC88BA6NC98 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC32.9■■■□□ 2.86
CCDC88BA6NC98 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC32.9■■■□□ 2.86
CCDC88BA6NC98 AC008556.1-201ENST00000610908 2040 ntBASIC32.9■■■□□ 2.86
CCDC88BA6NC98 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
CCDC88BA6NC98 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC32.9■■■□□ 2.86
CCDC88BA6NC98 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC32.9■■■□□ 2.86
CCDC88BA6NC98 PNN-202ENST00000553331 656 ntTSL 3 BASIC32.9■■■□□ 2.86
CCDC88BA6NC98 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC32.9■■■□□ 2.86
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms