Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 RN7SKP160-201ENST00000363804 340 ntBASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 AP002088.1-201ENST00000382740 395 ntBASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 MIR518C-201ENST00000384822 101 ntBASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 MIR1182-201ENST00000408363 97 ntBASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 RNU2-32P-201ENST00000411193 191 ntBASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 CALM2P4-201ENST00000430810 426 ntBASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 PGBD4P5-201ENST00000445958 426 ntBASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 RPL35AP15-201ENST00000468042 339 ntBASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 SNORA18.4-201ENST00000516440 124 ntBASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 RNA5SP153-201ENST00000516498 76 ntBASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 AC007225.2-201ENST00000562529 256 ntBASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 AL138880.2-201ENST00000616214 239 ntBASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 MIR6134-201ENST00000617606 109 ntBASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 BX005214.3-202ENST00000619809 325 ntBASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 AL035470.1-201ENST00000622571 220 ntBASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS9D1Q9Y2B5 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 AL450345.1-202ENST00000605741 3881 ntBASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 MIR600-201ENST00000385007 98 ntBASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 AC010618.1-201ENST00000469924 477 ntBASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 AL671862.1-201ENST00000515851 349 ntBASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 MIR4443-201ENST00000585052 53 ntBASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 UBE2Q2P6-201ENST00000612666 153 ntBASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS9D1Q9Y2B5 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 RN7SKP104-201ENST00000362605 328 ntBASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 RNU6-171P-201ENST00000384354 107 ntBASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 MIR891A-201ENST00000401237 79 ntBASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 RNU2-70P-201ENST00000410718 179 ntBASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 AL772161.1-201ENST00000439130 476 ntBASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 AC107297.1-201ENST00000459991 176 ntBASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 RN7SL441P-201ENST00000492388 296 ntBASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 IGKV2-18-201ENST00000522607 343 ntBASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 GNRHR2P1-201ENST00000555315 631 ntBASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 MED28P6-201ENST00000558776 231 ntBASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 POLR3GP1-201ENST00000594073 261 ntBASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 AL021997.2-201ENST00000615674 271 ntBASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 PCAT14-202ENST00000627127 3935 ntBASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
VPS9D1Q9Y2B5 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 IL33-202ENST00000417746 2327 ntTSL 2 BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 RNU4-41P-201ENST00000364426 143 ntBASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 MIR153-1-201ENST00000384914 90 ntBASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 AL139281.1-201ENST00000422120 335 ntBASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 AC000111.2-201ENST00000448200 210 ntBASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 AC012308.1-201ENST00000451232 178 ntBASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 RNU6-437P-201ENST00000459408 95 ntBASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 RPL23AP62-201ENST00000463396 453 ntBASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 RN7SL443P-201ENST00000464331 290 ntBASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 RPS21P4-201ENST00000487122 248 ntBASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 COX6CP6-201ENST00000490840 228 ntBASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 RPL30P5-201ENST00000494923 336 ntBASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 RNU1-117P-201ENST00000517041 158 ntBASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms