Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 AL731566.2-201ENST00000618971 317 ntBASIC4.73□□□□□ -1.65
BRPF3Q9ULD4 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
BRPF3Q9ULD4 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
BRPF3Q9ULD4 AC022336.2-201ENST00000568966 2538 ntBASIC4.73□□□□□ -1.65
BRPF3Q9ULD4 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 Y_RNA.64-201ENST00000362845 102 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 RNU6-770P-201ENST00000363929 105 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 RNU6-806P-201ENST00000365147 105 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 Y_RNA.447-201ENST00000384184 113 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 Y_RNA.471-201ENST00000384312 102 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 MT-TW-201ENST00000387382 68 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 MTCYBP2-201ENST00000407745 171 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 U3.37-201ENST00000408528 213 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 AL356968.1-201ENST00000416622 474 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 YPEL5P1-201ENST00000419731 367 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 MTCO3P29-201ENST00000432119 779 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 OR4C10P-201ENST00000434991 931 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 RNU6-1143P-201ENST00000516125 104 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 SNORA31.18-201ENST00000517043 134 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 RNU6-897P-201ENST00000517135 105 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 CASP1P1-201ENST00000526345 212 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 HSPE1P20-201ENST00000538133 289 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 AC023157.2-201ENST00000540596 141 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 GNRHR2P1-201ENST00000555315 631 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 DLEU2_2.2-201ENST00000615474 90 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 RLIMP1-201ENST00000339626 1680 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 CUL1P1-201ENST00000509510 2425 ntBASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
BRPF3Q9ULD4 OR56A5-201ENST00000340110 738 ntBASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 Y_RNA.19-201ENST00000362462 99 ntBASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 Z98749.2-208ENST00000381646 500 ntBASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 RNU6-217P-201ENST00000384164 104 ntBASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 SNORA70C-201ENST00000384538 135 ntBASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 RNU6-658P-201ENST00000384606 106 ntBASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 Z98949.2-201ENST00000440996 144 ntBASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 RPS29P31-201ENST00000446147 164 ntBASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 AL500522.2-201ENST00000448562 343 ntBASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 RNU1-103P-201ENST00000516502 125 ntBASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 LINC00933-203ENST00000559812 219 ntBASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 H3F3AP1-201ENST00000559984 334 ntBASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 AC011373.1-201ENST00000607270 237 ntBASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 5S_rRNA.12-201ENST00000617631 107 ntBASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
BRPF3Q9ULD4 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 AP000560.1-201ENST00000624150 1937 ntBASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 RNU6-105P-201ENST00000363909 104 ntBASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 RNA5SP399-201ENST00000364003 117 ntBASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 Y_RNA.376-201ENST00000365638 108 ntBASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 RNU6-708P-201ENST00000384217 107 ntBASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 SNORA12.2-201ENST00000391040 156 ntBASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 MIR190B-201ENST00000401119 79 ntBASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 MTATP6P7-201ENST00000453315 681 ntBASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 RNU6-1132P-201ENST00000459214 107 ntBASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 AC034114.1-201ENST00000520293 285 ntBASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 NDUFB9P3-201ENST00000521269 501 ntBASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 B3GNTL1P2-201ENST00000603673 288 ntBASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 AC130454.1-201ENST00000622948 401 ntBASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 U2.21-201ENST00000637295 81 ntBASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
BRPF3Q9ULD4 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
BRPF3Q9ULD4 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
BRPF3Q9ULD4 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
BRPF3Q9ULD4 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
BRPF3Q9ULD4 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
BRPF3Q9ULD4 AC010615.1-201ENST00000594254 1764 ntBASIC4.69□□□□□ -1.66
BRPF3Q9ULD4 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
BRPF3Q9ULD4 MIR372-201ENST00000362225 67 ntBASIC4.69□□□□□ -1.66
BRPF3Q9ULD4 SNORA60-201ENST00000362396 134 ntBASIC4.69□□□□□ -1.66
BRPF3Q9ULD4 Y_RNA.257-201ENST00000364596 102 ntBASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms