Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
CDX1P47902 Z69720.2-201ENST00000624755 279 ntBASIC2.38□□□□□ -2.03
CDX1P47902 FO624990.1-201ENST00000636373 85 ntBASIC2.38□□□□□ -2.03
CDX1P47902 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
CDX1P47902 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
CDX1P47902 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.37□□□□□ -2.03
CDX1P47902 Z82195.2-201ENST00000612348 18351 ntBASIC2.37□□□□□ -2.03
CDX1P47902 Y_RNA.41-201ENST00000362646 102 ntBASIC2.37□□□□□ -2.03
CDX1P47902 SNORA38-201ENST00000363946 132 ntBASIC2.37□□□□□ -2.03
CDX1P47902 Y_RNA.399-201ENST00000383955 105 ntBASIC2.37□□□□□ -2.03
CDX1P47902 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.37□□□□□ -2.03
CDX1P47902 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.37□□□□□ -2.03
CDX1P47902 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.37□□□□□ -2.03
CDX1P47902 RPL35AP12-201ENST00000425362 338 ntBASIC2.37□□□□□ -2.03
CDX1P47902 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.37□□□□□ -2.03
CDX1P47902 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.37□□□□□ -2.03
CDX1P47902 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.37□□□□□ -2.03
CDX1P47902 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.37□□□□□ -2.03
CDX1P47902 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.37□□□□□ -2.03
CDX1P47902 AP000852.1-201ENST00000472460 573 ntBASIC2.37□□□□□ -2.03
CDX1P47902 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.37□□□□□ -2.03
CDX1P47902 CKS1BP2-201ENST00000497342 240 ntBASIC2.37□□□□□ -2.03
CDX1P47902 RNU6-377P-201ENST00000515965 102 ntBASIC2.37□□□□□ -2.03
CDX1P47902 RNU6-506P-201ENST00000516553 94 ntBASIC2.37□□□□□ -2.03
CDX1P47902 SNORA31.23-201ENST00000517219 133 ntBASIC2.37□□□□□ -2.03
CDX1P47902 AC009812.2-201ENST00000517657 457 ntBASIC2.37□□□□□ -2.03
CDX1P47902 AC069113.1-201ENST00000517763 267 ntBASIC2.37□□□□□ -2.03
CDX1P47902 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.37□□□□□ -2.03
CDX1P47902 AC109329.2-201ENST00000519658 482 ntBASIC2.37□□□□□ -2.03
CDX1P47902 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.37□□□□□ -2.03
CDX1P47902 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.37□□□□□ -2.03
CDX1P47902 AL049779.4-201ENST00000604500 156 ntBASIC2.37□□□□□ -2.03
CDX1P47902 AL121917.1-203ENST00000605534 577 ntBASIC2.37□□□□□ -2.03
CDX1P47902 AL020991.1-201ENST00000612314 373 ntBASIC2.37□□□□□ -2.03
CDX1P47902 AC087241.4-201ENST00000612441 480 ntBASIC2.37□□□□□ -2.03
CDX1P47902 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
CDX1P47902 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.37□□□□□ -2.03
CDX1P47902 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CDX1P47902 RPL9P7-201ENST00000330965 580 ntBASIC2.36□□□□□ -2.03
CDX1P47902 RNU4-66P-201ENST00000365199 138 ntBASIC2.36□□□□□ -2.03
CDX1P47902 RNU6-487P-201ENST00000365430 104 ntBASIC2.36□□□□□ -2.03
CDX1P47902 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.36□□□□□ -2.03
CDX1P47902 RNU6-851P-201ENST00000384565 107 ntBASIC2.36□□□□□ -2.03
CDX1P47902 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CDX1P47902 RNU6-1140P-201ENST00000410517 106 ntBASIC2.36□□□□□ -2.03
CDX1P47902 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.36□□□□□ -2.03
CDX1P47902 RPS3AP44-201ENST00000425466 790 ntBASIC2.36□□□□□ -2.03
CDX1P47902 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.36□□□□□ -2.03
CDX1P47902 AC022018.1-201ENST00000430685 241 ntBASIC2.36□□□□□ -2.03
CDX1P47902 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC2.36□□□□□ -2.03
CDX1P47902 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.36□□□□□ -2.03
CDX1P47902 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.36□□□□□ -2.03
CDX1P47902 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.36□□□□□ -2.03
CDX1P47902 Y_RNA.693-201ENST00000516641 110 ntBASIC2.36□□□□□ -2.03
CDX1P47902 SCARNA13-201ENST00000516672 275 ntBASIC2.36□□□□□ -2.03
CDX1P47902 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.36□□□□□ -2.03
CDX1P47902 MTCO3P23-201ENST00000561363 289 ntBASIC2.36□□□□□ -2.03
CDX1P47902 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.36□□□□□ -2.03
CDX1P47902 AC073410.2-201ENST00000603240 332 ntBASIC2.36□□□□□ -2.03
CDX1P47902 AC004492.1-201ENST00000607036 742 ntBASIC2.36□□□□□ -2.03
CDX1P47902 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.36□□□□□ -2.03
CDX1P47902 AC024581.2-201ENST00000619986 252 ntBASIC2.36□□□□□ -2.03
CDX1P47902 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.36□□□□□ -2.03
CDX1P47902 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CDX1P47902 ZNF271P-202ENST00000465539 1970 ntBASIC2.36□□□□□ -2.03
CDX1P47902 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.36□□□□□ -2.03
CDX1P47902 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
CDX1P47902 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
CDX1P47902 RNU6-266P-201ENST00000364225 107 ntBASIC2.35□□□□□ -2.03
CDX1P47902 Y_RNA.372-201ENST00000365599 102 ntBASIC2.35□□□□□ -2.03
CDX1P47902 RNU1-138P-201ENST00000384093 164 ntBASIC2.35□□□□□ -2.03
CDX1P47902 SNORA54-201ENST00000384281 123 ntBASIC2.35□□□□□ -2.03
CDX1P47902 RNU6-1072P-201ENST00000384703 107 ntBASIC2.35□□□□□ -2.03
CDX1P47902 SNORD116-4-201ENST00000384733 96 ntBASIC2.35□□□□□ -2.03
CDX1P47902 RNU6-443P-201ENST00000384780 107 ntBASIC2.35□□□□□ -2.03
CDX1P47902 SNORD67-201ENST00000390833 111 ntBASIC2.35□□□□□ -2.03
CDX1P47902 RNA5SP390-201ENST00000410191 113 ntBASIC2.35□□□□□ -2.03
CDX1P47902 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.35□□□□□ -2.03
CDX1P47902 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.35□□□□□ -2.03
CDX1P47902 CR769767.1-201ENST00000436337 346 ntBASIC2.35□□□□□ -2.03
CDX1P47902 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.35□□□□□ -2.03
CDX1P47902 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.35□□□□□ -2.03
CDX1P47902 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.35□□□□□ -2.03
CDX1P47902 AC133134.1-201ENST00000466800 359 ntBASIC2.35□□□□□ -2.03
CDX1P47902 MTCO3P38-201ENST00000468910 766 ntBASIC2.35□□□□□ -2.03
CDX1P47902 RPL23AP45-201ENST00000476406 468 ntBASIC2.35□□□□□ -2.03
CDX1P47902 MTCYBP40-201ENST00000509390 1135 ntBASIC2.35□□□□□ -2.03
CDX1P47902 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.35□□□□□ -2.03
CDX1P47902 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.35□□□□□ -2.03
CDX1P47902 RNU4-29P-201ENST00000515943 174 ntBASIC2.35□□□□□ -2.03
CDX1P47902 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CDX1P47902 AC023050.3-201ENST00000541142 333 ntBASIC2.35□□□□□ -2.03
CDX1P47902 PSMA3P-201ENST00000555485 635 ntBASIC2.35□□□□□ -2.03
CDX1P47902 AC027176.1-201ENST00000560204 514 ntBASIC2.35□□□□□ -2.03
CDX1P47902 AC136619.2-201ENST00000563361 631 ntBASIC2.35□□□□□ -2.03
CDX1P47902 AC025165.5-201ENST00000602802 578 ntBASIC2.35□□□□□ -2.03
CDX1P47902 uc_338.15-201ENST00000615470 191 ntBASIC2.35□□□□□ -2.03
CDX1P47902 MIR5739-201ENST00000619803 80 ntBASIC2.35□□□□□ -2.03
CDX1P47902 U4.7-201ENST00000638126 106 ntBASIC2.35□□□□□ -2.03
CDX1P47902 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms