Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSX1P28360 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.43□□□□□ -1.7
MSX1P28360 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
MSX1P28360 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSX1P28360 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSX1P28360 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
MSX1P28360 ZFRP1-201ENST00000457579 2970 ntBASIC4.43□□□□□ -1.7
MSX1P28360 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSX1P28360 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.43□□□□□ -1.7
MSX1P28360 LINC01355-201ENST00000566551 5444 ntBASIC4.43□□□□□ -1.7
MSX1P28360 RNU6-1298P-201ENST00000362456 101 ntBASIC4.43□□□□□ -1.7
MSX1P28360 Y_RNA.43-201ENST00000362670 111 ntBASIC4.43□□□□□ -1.7
MSX1P28360 RNU6-801P-201ENST00000364087 105 ntBASIC4.43□□□□□ -1.7
MSX1P28360 snoU2_19.4-201ENST00000364329 80 ntBASIC4.43□□□□□ -1.7
MSX1P28360 RNU6-217P-201ENST00000384164 104 ntBASIC4.43□□□□□ -1.7
MSX1P28360 Y_RNA.563-201ENST00000384707 108 ntBASIC4.43□□□□□ -1.7
MSX1P28360 MIR626-201ENST00000385032 94 ntBASIC4.43□□□□□ -1.7
MSX1P28360 MIR1271-201ENST00000408537 86 ntBASIC4.43□□□□□ -1.7
MSX1P28360 U3.40-201ENST00000408706 208 ntBASIC4.43□□□□□ -1.7
MSX1P28360 RN7SKP100-201ENST00000411258 284 ntBASIC4.43□□□□□ -1.7
MSX1P28360 AC068287.1-201ENST00000430283 295 ntBASIC4.43□□□□□ -1.7
MSX1P28360 HMGB1P37-201ENST00000439613 609 ntBASIC4.43□□□□□ -1.7
MSX1P28360 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.43□□□□□ -1.7
MSX1P28360 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.43□□□□□ -1.7
MSX1P28360 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.43□□□□□ -1.7
MSX1P28360 RNU2-12P-201ENST00000517216 168 ntBASIC4.43□□□□□ -1.7
MSX1P28360 AC136628.3-201ENST00000521868 290 ntBASIC4.43□□□□□ -1.7
MSX1P28360 AC005868.1-201ENST00000536421 331 ntBASIC4.43□□□□□ -1.7
MSX1P28360 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.43□□□□□ -1.7
MSX1P28360 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.43□□□□□ -1.7
MSX1P28360 AC013791.1-201ENST00000616619 62 ntBASIC4.43□□□□□ -1.7
MSX1P28360 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSX1P28360 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.43□□□□□ -1.7
MSX1P28360 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSX1P28360 AK9-203ENST00000368948 2478 ntTSL 5 BASIC4.43□□□□□ -1.7
MSX1P28360 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
MSX1P28360 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSX1P28360 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
MSX1P28360 A2MP1-204ENST00000566278 4130 ntBASIC4.42□□□□□ -1.7
MSX1P28360 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
MSX1P28360 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSX1P28360 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSX1P28360 MIR888-201ENST00000401186 77 ntBASIC4.42□□□□□ -1.7
MSX1P28360 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.42□□□□□ -1.7
MSX1P28360 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC4.42□□□□□ -1.7
MSX1P28360 UQCRHP4-201ENST00000471686 272 ntBASIC4.42□□□□□ -1.7
MSX1P28360 RNU6-659P-201ENST00000516454 104 ntBASIC4.42□□□□□ -1.7
MSX1P28360 RNU6-709P-201ENST00000517257 104 ntBASIC4.42□□□□□ -1.7
MSX1P28360 AC109810.1-201ENST00000534066 224 ntBASIC4.42□□□□□ -1.7
MSX1P28360 MIR4284-201ENST00000578924 81 ntBASIC4.42□□□□□ -1.7
MSX1P28360 AL356575.1-201ENST00000603008 283 ntBASIC4.42□□□□□ -1.7
MSX1P28360 TEX41-243ENST00000614173 190 ntTSL 5 BASIC4.42□□□□□ -1.7
MSX1P28360 AC015914.2-201ENST00000618167 288 ntBASIC4.42□□□□□ -1.7
MSX1P28360 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSX1P28360 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
MSX1P28360 AC025031.4-201ENST00000621248 3271 ntBASIC4.42□□□□□ -1.7
MSX1P28360 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
MSX1P28360 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSX1P28360 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
MSX1P28360 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSX1P28360 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
MSX1P28360 AC126755.2-208ENST00000327792 462 ntBASIC4.41□□□□□ -1.7
MSX1P28360 AC138969.1-213ENST00000331436 462 ntBASIC4.41□□□□□ -1.7
MSX1P28360 DLEU2_6.3-201ENST00000340052 136 ntBASIC4.41□□□□□ -1.7
MSX1P28360 RNU1-62P-201ENST00000362599 164 ntBASIC4.41□□□□□ -1.7
MSX1P28360 RNU6-799P-201ENST00000363567 107 ntBASIC4.41□□□□□ -1.7
MSX1P28360 RNU6-324P-201ENST00000363957 106 ntBASIC4.41□□□□□ -1.7
MSX1P28360 SNORA8.3-201ENST00000384679 139 ntBASIC4.41□□□□□ -1.7
MSX1P28360 U3.22-201ENST00000391120 215 ntBASIC4.41□□□□□ -1.7
MSX1P28360 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC4.41□□□□□ -1.7
MSX1P28360 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.41□□□□□ -1.7
MSX1P28360 RNU7-197P-201ENST00000458836 62 ntBASIC4.41□□□□□ -1.7
MSX1P28360 RNU1-6P-201ENST00000516290 144 ntBASIC4.41□□□□□ -1.7
MSX1P28360 RNU6-1282P-201ENST00000516735 96 ntBASIC4.41□□□□□ -1.7
MSX1P28360 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.41□□□□□ -1.7
MSX1P28360 AC090877.1-201ENST00000561418 344 ntBASIC4.41□□□□□ -1.7
MSX1P28360 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.41□□□□□ -1.7
MSX1P28360 AC012468.1-201ENST00000604888 430 ntBASIC4.41□□□□□ -1.7
MSX1P28360 AC083809.1-201ENST00000615051 472 ntBASIC4.41□□□□□ -1.7
MSX1P28360 AL021997.2-201ENST00000615674 271 ntBASIC4.41□□□□□ -1.7
MSX1P28360 MIR6758-201ENST00000620653 63 ntBASIC4.41□□□□□ -1.7
MSX1P28360 DLEU2_6.2-201ENST00000620994 136 ntBASIC4.41□□□□□ -1.7
MSX1P28360 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
MSX1P28360 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
MSX1P28360 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.41□□□□□ -1.7
MSX1P28360 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSX1P28360 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
MSX1P28360 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.41□□□□□ -1.7
MSX1P28360 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.41□□□□□ -1.7
MSX1P28360 MAPK10-286ENST00000641208 8747 ntBASIC4.4□□□□□ -1.7
MSX1P28360 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
MSX1P28360 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.4□□□□□ -1.7
MSX1P28360 DHX9P1-201ENST00000436565 3076 ntBASIC4.4□□□□□ -1.7
MSX1P28360 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
MSX1P28360 RNU1-108P-201ENST00000362556 161 ntBASIC4.4□□□□□ -1.71
MSX1P28360 SNORA63.4-201ENST00000362763 126 ntBASIC4.4□□□□□ -1.71
MSX1P28360 RNU6-727P-201ENST00000363592 107 ntBASIC4.4□□□□□ -1.71
MSX1P28360 MIR124-3-201ENST00000384866 87 ntBASIC4.4□□□□□ -1.71
MSX1P28360 MIR549A-201ENST00000385268 96 ntBASIC4.4□□□□□ -1.71
MSX1P28360 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 167.7 ms