Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.48□□□□□ -1.85
COL4A3Q01955 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.48□□□□□ -1.85
COL4A3Q01955 AC007375.1-201ENST00000554513 578 ntBASIC3.48□□□□□ -1.85
COL4A3Q01955 MIR1273C-201ENST00000578669 77 ntBASIC3.48□□□□□ -1.85
COL4A3Q01955 AC020914.4-201ENST00000597690 277 ntBASIC3.48□□□□□ -1.85
COL4A3Q01955 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL4A3Q01955 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
COL4A3Q01955 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL4A3Q01955 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
COL4A3Q01955 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
COL4A3Q01955 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL4A3Q01955 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.47□□□□□ -1.85
COL4A3Q01955 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
COL4A3Q01955 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.47□□□□□ -1.85
COL4A3Q01955 RPL9P7-201ENST00000330965 580 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 Y_RNA.276-201ENST00000364732 109 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 RNU4-42P-201ENST00000364738 142 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 RNU6-806P-201ENST00000365147 105 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 U8.8-201ENST00000365399 135 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 RNU6-209P-201ENST00000384118 107 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 RNU6-882P-201ENST00000391025 103 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 RNU6-325P-201ENST00000411132 105 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.47□□□□□ -1.85
COL4A3Q01955 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.47□□□□□ -1.85
COL4A3Q01955 AL513043.1-201ENST00000439124 535 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.47□□□□□ -1.85
COL4A3Q01955 FCF1P4-201ENST00000448326 183 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 RPL9P9-202ENST00000466501 579 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 AC133134.1-201ENST00000466800 359 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 APOOP4-201ENST00000513530 597 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 RN7SKP40-201ENST00000517211 242 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.47□□□□□ -1.85
COL4A3Q01955 CPDP1-201ENST00000579660 283 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 MIR3976-201ENST00000606807 139 ntBASIC3.47□□□□□ -1.85
COL4A3Q01955 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL4A3Q01955 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL4A3Q01955 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL4A3Q01955 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC3.47□□□□□ -1.85
COL4A3Q01955 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL4A3Q01955 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL4A3Q01955 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
COL4A3Q01955 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.46□□□□□ -1.85
COL4A3Q01955 Y_RNA.26-201ENST00000362539 101 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 SNORA5B-201ENST00000363786 132 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 RNU4-50P-201ENST00000364361 141 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 SNORA36C-201ENST00000384289 132 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 Y_RNA.483-201ENST00000384380 101 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 AL096701.2-201ENST00000416920 238 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.46□□□□□ -1.85
COL4A3Q01955 CKS1BP5-201ENST00000434172 273 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 RPL29P29-201ENST00000448725 423 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 AC113155.1-201ENST00000511141 769 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 Y_RNA.687-201ENST00000516558 91 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 SNORA40.15-201ENST00000516884 107 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.46□□□□□ -1.85
COL4A3Q01955 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.46□□□□□ -1.85
COL4A3Q01955 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.46□□□□□ -1.85
COL4A3Q01955 RPS29P30-201ENST00000600975 111 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 RPL12P50-201ENST00000603116 116 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 AL162713.1-201ENST00000604480 262 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 AL121917.1-203ENST00000605534 577 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 AC096772.1-201ENST00000609146 564 ntBASIC3.46□□□□□ -1.85
COL4A3Q01955 LINC02471-203ENST00000641941 4752 ntBASIC3.46□□□□□ -1.86
COL4A3Q01955 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.46□□□□□ -1.86
COL4A3Q01955 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
COL4A3Q01955 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
COL4A3Q01955 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.46□□□□□ -1.86
COL4A3Q01955 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.46□□□□□ -1.86
COL4A3Q01955 Y_RNA.19-201ENST00000362462 99 ntBASIC3.46□□□□□ -1.86
COL4A3Q01955 RNU6-283P-201ENST00000364788 107 ntBASIC3.46□□□□□ -1.86
COL4A3Q01955 Y_RNA.515-201ENST00000384535 112 ntBASIC3.46□□□□□ -1.86
COL4A3Q01955 U3.42-201ENST00000408746 214 ntBASIC3.46□□□□□ -1.86
COL4A3Q01955 AC132942.1-201ENST00000486753 483 ntBASIC3.46□□□□□ -1.86
COL4A3Q01955 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC3.46□□□□□ -1.86
COL4A3Q01955 HMGB1P35-201ENST00000503360 598 ntBASIC3.46□□□□□ -1.86
COL4A3Q01955 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.46□□□□□ -1.86
COL4A3Q01955 AC025465.3-201ENST00000510570 311 ntBASIC3.46□□□□□ -1.86
COL4A3Q01955 RNU6-1023P-201ENST00000516137 106 ntBASIC3.46□□□□□ -1.86
COL4A3Q01955 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
COL4A3Q01955 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.46□□□□□ -1.86
COL4A3Q01955 TRAV37-201ENST00000553906 342 ntBASIC3.46□□□□□ -1.86
COL4A3Q01955 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.46□□□□□ -1.86
COL4A3Q01955 AL355810.1-201ENST00000614629 552 ntBASIC3.46□□□□□ -1.86
COL4A3Q01955 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A3Q01955 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A3Q01955 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL4A3Q01955 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.45□□□□□ -1.86
COL4A3Q01955 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC3.45□□□□□ -1.86
COL4A3Q01955 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL4A3Q01955 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL4A3Q01955 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL4A3Q01955 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.45□□□□□ -1.86
COL4A3Q01955 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.45□□□□□ -1.86
COL4A3Q01955 SNORA51.11-201ENST00000384442 131 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 AL591034.2-201ENST00000402839 359 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 AL513475.1-201ENST00000406602 315 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 AL513331.1-201ENST00000411908 397 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 MTCO3P19-201ENST00000415864 321 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 RPL26P6-201ENST00000440913 438 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms