Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
USP3Q9Y6I4 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP3Q9Y6I4 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP3Q9Y6I4 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 FTLP6-201ENST00000355274 422 ntBASIC4.63□□□□□ -1.67
USP3Q9Y6I4 RNU6-449P-201ENST00000383914 107 ntBASIC4.63□□□□□ -1.67
USP3Q9Y6I4 SNORD116-18-201ENST00000383961 92 ntBASIC4.63□□□□□ -1.67
USP3Q9Y6I4 RPS20P14-201ENST00000412545 360 ntBASIC4.63□□□□□ -1.67
USP3Q9Y6I4 AC074117.2-201ENST00000417130 397 ntBASIC4.63□□□□□ -1.67
USP3Q9Y6I4 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 RNY3P16-201ENST00000516338 101 ntBASIC4.63□□□□□ -1.67
USP3Q9Y6I4 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.63□□□□□ -1.67
USP3Q9Y6I4 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 AC005828.6-201ENST00000606610 232 ntBASIC4.63□□□□□ -1.67
USP3Q9Y6I4 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP3Q9Y6I4 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 AC135776.4-201ENST00000624300 1904 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 MIR331-201ENST00000362302 94 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 RNU6-653P-201ENST00000363074 106 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 RNU6-778P-201ENST00000363269 103 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 Y_RNA.400-201ENST00000383963 111 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 RNU1-73P-201ENST00000383971 164 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 Y_RNA.497-201ENST00000384447 98 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 Y_RNA.571-201ENST00000384753 98 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 TOMM22P1-201ENST00000418578 312 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 AC024067.1-201ENST00000426199 223 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 AC112220.1-201ENST00000434628 355 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 PHBP16-201ENST00000446318 950 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 AC108022.1-201ENST00000493466 478 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 CKS1BP7-201ENST00000522230 235 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 RPL23AP97-201ENST00000568955 471 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 AC113403.1-201ENST00000604910 193 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 MIR6810-201ENST00000622701 70 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 AC011944.2-201ENST00000624440 683 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 AC048347.1-201ENST00000624621 427 ntBASIC4.62□□□□□ -1.67
USP3Q9Y6I4 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.62□□□□□ -1.67
USP3Q9Y6I4 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 Y_RNA.23-201ENST00000362496 106 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 SNORD56.1-201ENST00000362913 68 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 Y_RNA.121-201ENST00000363309 113 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 RNA5SP515-201ENST00000364570 118 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 RNU4-56P-201ENST00000364700 142 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 RNU1-140P-201ENST00000365040 165 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 RNU1-100P-201ENST00000365255 165 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 RNU6-1310P-201ENST00000384153 107 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 Y_RNA.488-201ENST00000384403 102 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 RNU6-1197P-201ENST00000391183 107 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 AC011998.1-201ENST00000433403 117 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 AC125238.1-201ENST00000448842 249 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 RN7SL303P-201ENST00000469773 251 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 RPS4XP22-201ENST00000480755 780 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 AC140059.1-201ENST00000489238 361 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 TRAV8-5-201ENST00000537369 341 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 AC083809.1-201ENST00000615051 472 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 AL136964.1-201ENST00000622038 2990 ntBASIC4.61□□□□□ -1.67
USP3Q9Y6I4 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
USP3Q9Y6I4 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms