Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RNA5SP44-201ENST00000410446 133 ntBASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 RN7SKP27-201ENST00000410684 333 ntBASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 RPL26P27-201ENST00000414397 437 ntBASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 snoU109.2-201ENST00000459316 135 ntBASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 RN7SL810P-201ENST00000493031 276 ntBASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 FTH1P24-201ENST00000503502 462 ntBASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 AC090971.4-201ENST00000560291 1800 ntBASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 AL353743.1-202ENST00000431724 1695 ntBASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 RNU6-324P-201ENST00000363957 106 ntBASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 Y_RNA.219-201ENST00000364232 113 ntBASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 SNORA70C-201ENST00000384538 135 ntBASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 MT-TC-201ENST00000387405 66 ntBASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 MLLT10P1-201ENST00000418346 262 ntBASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 RPL23AP93-201ENST00000440847 484 ntBASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 RPL21P6-201ENST00000479171 504 ntBASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 RNU6-781P-201ENST00000516377 101 ntBASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 CYCSP29-201ENST00000533731 318 ntBASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 AL442128.1-201ENST00000615151 90 ntBASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 AL391261.4-201ENST00000616012 481 ntBASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
NPAS3Q8IXF0 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 RNU6-766P-201ENST00000362478 107 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 RNA5SP388-201ENST00000362584 119 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 Y_RNA.280-201ENST00000364765 112 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 RNU6-1074P-201ENST00000383995 104 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 Y_RNA.498-201ENST00000384460 102 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 SDHCP2-201ENST00000398565 501 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 AL606845.1-201ENST00000404881 255 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 OR2AH1P-201ENST00000425717 928 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 AP000936.3-201ENST00000438127 255 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 AL445687.1-201ENST00000439946 251 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 AC091874.1-201ENST00000511402 339 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 SNORA40.13-201ENST00000516379 120 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 RNU6-58P-201ENST00000517143 103 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 HSPE1P4-201ENST00000550617 308 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 AC018448.1-201ENST00000552843 316 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 AL031274.2-201ENST00000599419 203 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 AC091979.2-201ENST00000607514 214 ntBASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.76□□□□□ -1.65
NPAS3Q8IXF0 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 RNU5A-1-201ENST00000362698 116 ntBASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 SNORA51.5-201ENST00000384126 131 ntBASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 SNORA29-201ENST00000384183 140 ntBASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 RNA5SP296-201ENST00000410523 111 ntBASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 AC011998.1-201ENST00000433403 117 ntBASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 RN7SL98P-201ENST00000462271 300 ntBASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms