Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 Y_RNA.432-201ENST00000384087 111 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 AC009804.1-201ENST00000400949 179 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 RNU4-34P-201ENST00000410431 124 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 RNU2-55P-201ENST00000411146 174 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 FAR2P2-201ENST00000413041 594 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 AC126124.2-201ENST00000413542 321 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 GEMIN8P3-201ENST00000445417 720 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 AC117454.1-201ENST00000491120 168 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 MLLT10P2-201ENST00000506434 249 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 MRPS36P2-201ENST00000512569 299 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 RNA5SP395-201ENST00000516567 118 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 AL160236.1-201ENST00000556317 195 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 VN1R85P-201ENST00000601587 426 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 AC025754.2-201ENST00000606491 432 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 MIR570-201ENST00000384917 97 ntBASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 RN7SL547P-201ENST00000490793 290 ntBASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 SNORA70.12-201ENST00000516084 153 ntBASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 MIR4660-201ENST00000583549 74 ntBASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 SNORD115-40-201ENST00000606510 82 ntBASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 MIR2052-201ENST00000636055 55 ntBASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
VPS9D1Q9Y2B5 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 RNU1-146P-201ENST00000364015 165 ntBASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 Y_RNA.323-201ENST00000365157 109 ntBASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 Y_RNA.361-201ENST00000365515 120 ntBASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 SNORA67-201ENST00000384423 137 ntBASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 RNU6-146P-201ENST00000384602 108 ntBASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 AC019205.3-201ENST00000424573 156 ntBASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 AC090515.1-201ENST00000465295 476 ntBASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 BX510359.5-201ENST00000515651 304 ntBASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 RNU6-941P-201ENST00000516346 108 ntBASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 RNU7-115P-201ENST00000516433 55 ntBASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 IGKV1-22-201ENST00000524313 326 ntBASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 AC053481.4-201ENST00000583164 216 ntBASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 AC136601.2-201ENST00000604356 474 ntBASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 MIR6826-201ENST00000617808 98 ntBASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 MIR6837-201ENST00000620884 64 ntBASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS9D1Q9Y2B5 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.57
VPS9D1Q9Y2B5 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.21□□□□□ -1.58
VPS9D1Q9Y2B5 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.21□□□□□ -1.58
VPS9D1Q9Y2B5 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS9D1Q9Y2B5 RNY1P10-201ENST00000363268 113 ntBASIC5.21□□□□□ -1.58
VPS9D1Q9Y2B5 MIR1290-201ENST00000408735 78 ntBASIC5.21□□□□□ -1.58
VPS9D1Q9Y2B5 AC009238.2-201ENST00000431026 355 ntBASIC5.21□□□□□ -1.58
VPS9D1Q9Y2B5 RPS29P10-201ENST00000439197 166 ntBASIC5.21□□□□□ -1.58
VPS9D1Q9Y2B5 TDGF1P1-201ENST00000445734 527 ntBASIC5.21□□□□□ -1.58
VPS9D1Q9Y2B5 AC021205.2-201ENST00000480069 347 ntBASIC5.21□□□□□ -1.58
VPS9D1Q9Y2B5 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS9D1Q9Y2B5 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS9D1Q9Y2B5 RNU6-109P-201ENST00000516364 107 ntBASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms