Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 Y_RNA.106-201ENST00000363189 100 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 Y_RNA.489-201ENST00000384410 101 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 RNU6-45P-201ENST00000384471 107 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 Z99755.1-201ENST00000414048 380 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 RPL21P90-201ENST00000415692 466 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 USMG5P1-201ENST00000425964 177 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 USP9YP30-201ENST00000430729 455 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 AC010099.1-201ENST00000455434 375 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 snoU13.28-201ENST00000459235 104 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 RN7SL542P-201ENST00000467147 294 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 AC022493.1-201ENST00000492984 337 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 AC008716.1-201ENST00000511084 513 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 RNU1-54P-201ENST00000517181 120 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 AC025755.1-201ENST00000521306 278 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 AC023157.2-201ENST00000540596 141 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 AC091516.1-201ENST00000549191 703 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 AL355297.3-201ENST00000604082 446 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 MIR8062-201ENST00000621515 85 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 U2.21-201ENST00000637295 81 ntBASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 RNU6-884P-201ENST00000363889 107 ntBASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 RNU6ATAC-201ENST00000408749 126 ntBASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 RNU2-23P-201ENST00000410545 195 ntBASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 MRPS18CP6-201ENST00000423587 223 ntBASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 MYL8P-204ENST00000431574 518 ntBASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 AC007389.2-201ENST00000434630 306 ntBASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 RPL21P2-201ENST00000440049 481 ntBASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 AL360271.2-201ENST00000447710 161 ntBASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 MIR486-1-201ENST00000612171 68 ntBASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CLIP3Q96DZ5 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 MIR412-201ENST00000362142 91 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 SNORD62.1-201ENST00000362541 86 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RNU6-1059P-201ENST00000363752 98 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RNA5SP97-201ENST00000365006 84 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RNU6-209P-201ENST00000384118 107 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RNU6-842P-201ENST00000384269 107 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RNU6-306P-201ENST00000384617 107 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RNU6-1179P-201ENST00000384667 107 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 MIR591-201ENST00000385290 95 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RPL21P1-201ENST00000399532 476 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RNU6-101P-201ENST00000410323 104 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RNU6-55P-201ENST00000411092 107 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RPL26P27-201ENST00000414397 437 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RPL21P109-201ENST00000422213 475 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 AC098614.2-201ENST00000426040 255 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 HMGB1P9-201ENST00000429856 646 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 TBCAP1-201ENST00000436520 327 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RPL37P4-201ENST00000448908 268 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 AL353752.1-201ENST00000454946 260 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 HMGN2P13-201ENST00000476476 274 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RPL21P13-201ENST00000488305 481 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RNU2-53P-201ENST00000516257 147 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RNY3P15-201ENST00000516297 97 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RNU1-103P-201ENST00000516502 125 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RNU6-703P-201ENST00000516946 107 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 RNA5SP179-201ENST00000517284 121 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 IGHV3-76-201ENST00000522465 295 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 MIR432-201ENST00000606207 94 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 AL161423.1-201ENST00000613700 262 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 144.8 ms