Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ATP5HP2-201ENST00000433885 485 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXD3P31249 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXD3P31249 RPL21P23-201ENST00000446654 460 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.87□□□□□ -1.95
HOXD3P31249 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXD3P31249 TAF8-207ENST00000482432 556 ntTSL 2 BASIC2.87□□□□□ -1.95
HOXD3P31249 AC106707.2-201ENST00000484182 374 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 RPL21P13-201ENST00000488305 481 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 RPL30P5-201ENST00000494923 336 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 SMURF2P1-201ENST00000514992 481 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 SCARNA16.2-201ENST00000516520 172 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HOXD3P31249 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXD3P31249 TRAV32-201ENST00000553993 340 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXD3P31249 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXD3P31249 MTCO3P13-201ENST00000577757 781 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXD3P31249 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXD3P31249 AC016925.2-201ENST00000605108 242 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 MIR3976-201ENST00000606807 139 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 FTX_3.1-201ENST00000610451 147 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXD3P31249 Z69720.2-201ENST00000624755 279 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 AC073346.2-201ENST00000624724 2058 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HOXD3P31249 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HOXD3P31249 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
HOXD3P31249 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC2.86□□□□□ -1.95
HOXD3P31249 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HOXD3P31249 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HOXD3P31249 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HOXD3P31249 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HOXD3P31249 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC2.86□□□□□ -1.95
HOXD3P31249 Y_RNA.48-201ENST00000362710 103 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 SNORA33.2-201ENST00000365413 134 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 RNU6-827P-201ENST00000365553 106 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 Z98749.2-208ENST00000381646 500 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 RNU6-217P-201ENST00000384164 104 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 RNU6-738P-201ENST00000384531 106 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.86□□□□□ -1.95
HOXD3P31249 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC2.86□□□□□ -1.95
HOXD3P31249 AL158071.1-201ENST00000430315 461 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 AL160004.2-201ENST00000432935 350 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 SNRPEP4-201ENST00000435815 279 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.86□□□□□ -1.95
HOXD3P31249 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC2.86□□□□□ -1.95
HOXD3P31249 NDUFB1P2-201ENST00000449477 176 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 PCMTD1P1-201ENST00000455560 355 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 RPL23AP45-201ENST00000476406 468 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 TRBV12-2-201ENST00000489763 344 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.86□□□□□ -1.95
HOXD3P31249 PTP4A1P4-201ENST00000512479 322 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 SCARNA13-201ENST00000516672 275 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 RNU6-1282P-201ENST00000516735 96 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 RNU6-928P-201ENST00000516876 104 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HOXD3P31249 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.86□□□□□ -1.95
HOXD3P31249 AC107016.1-201ENST00000550463 337 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 AC103996.1-201ENST00000555468 102 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 H3F3AP1-201ENST00000559984 334 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 CYCSP39-201ENST00000565821 309 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.86□□□□□ -1.95
HOXD3P31249 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.86□□□□□ -1.95
HOXD3P31249 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.86□□□□□ -1.95
HOXD3P31249 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
HOXD3P31249 CYP2C61P-201ENST00000604072 290 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 AC068831.7-201ENST00000616954 363 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 AC027309.3-201ENST00000623419 351 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
HOXD3P31249 AC090617.7-201ENST00000623952 126 ntBASIC2.86□□□□□ -1.95
HOXD3P31249 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC2.86□□□□□ -1.95
HOXD3P31249 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC2.86□□□□□ -1.95
HOXD3P31249 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HOXD3P31249 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.86□□□□□ -1.95
HOXD3P31249 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HOXD3P31249 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HOXD3P31249 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HOXD3P31249 MTND4P1-201ENST00000457501 1466 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
HOXD3P31249 RNU6-428P-201ENST00000362942 107 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 Y_RNA.202-201ENST00000364083 110 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 RNU6-1317P-201ENST00000364582 104 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 RNU6-1040P-201ENST00000383974 107 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 RNU6-790P-201ENST00000384479 105 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HOXD3P31249 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXD3P31249 RN7SKP53-201ENST00000411337 315 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD3P31249 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD3P31249 AC243428.1-201ENST00000421099 264 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 AC098614.2-201ENST00000426040 255 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 IGKV1OR9-2-201ENST00000431378 277 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD3P31249 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD3P31249 AL078601.1-201ENST00000444542 271 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 MTND4P19-201ENST00000446659 478 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 RPS3AP46-201ENST00000448352 682 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 RN7SL330P-201ENST00000469709 307 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms