Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 RNY4P28-201ENST00000365281 93 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 SNORD63-201ENST00000384262 68 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 Y_RNA.504-201ENST00000384481 104 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 RNU6-1081P-201ENST00000384537 107 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 MIR613-201ENST00000385248 95 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 Z85995.1-201ENST00000415547 335 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 AL451074.5-201ENST00000415894 435 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 EIF1P2-201ENST00000428233 350 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 RPL21P104-201ENST00000464143 478 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 COX6CP14-201ENST00000469580 174 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 RPL7P47-201ENST00000497299 556 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 RNA5SP165-201ENST00000517142 115 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 AC010928.2-201ENST00000588017 287 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 BPIFA4P-203ENST00000603168 689 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 AC096577.2-201ENST00000611455 153 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 AC012314.7-201ENST00000619693 93 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 U4.7-201ENST00000638126 106 ntBASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC5.33□□□□□ -1.56
ZC3H4Q9UPT8 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 RNU6-326P-201ENST00000365480 107 ntBASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 Y_RNA.569-201ENST00000384749 103 ntBASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 MIR32-201ENST00000384965 70 ntBASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 MIR607-201ENST00000385241 96 ntBASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 RPL19P1-201ENST00000411635 428 ntBASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 CKS1BP6-201ENST00000424932 240 ntBASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 COX6B1P7-201ENST00000430845 235 ntBASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 AC108751.2-201ENST00000469993 231 ntBASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 RPL23AP49-201ENST00000492925 468 ntBASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 RN7SL812P-201ENST00000493791 279 ntBASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 SNORA31.20-201ENST00000517111 133 ntBASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 RPL21P7-201ENST00000557463 483 ntBASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 AC116096.1-201ENST00000566804 2314 ntBASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.32□□□□□ -1.56
ZC3H4Q9UPT8 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 RNU6-527P-201ENST00000363425 104 ntBASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 RNU6-651P-201ENST00000411040 105 ntBASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 RNU2-61P-201ENST00000411069 191 ntBASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 AC011742.1-201ENST00000431448 434 ntBASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 AC016700.2-201ENST00000446011 156 ntBASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 KC877373.1-201ENST00000479066 408 ntBASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 AC104465.1-201ENST00000611365 139 ntBASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 DHX9P1-201ENST00000436565 3076 ntBASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
ZC3H4Q9UPT8 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
ZC3H4Q9UPT8 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
ZC3H4Q9UPT8 SNORA31-201ENST00000362607 130 ntBASIC5.3□□□□□ -1.56
ZC3H4Q9UPT8 RNU1-14P-201ENST00000362759 152 ntBASIC5.3□□□□□ -1.56
ZC3H4Q9UPT8 RNU6-704P-201ENST00000364162 103 ntBASIC5.3□□□□□ -1.56
ZC3H4Q9UPT8 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
ZC3H4Q9UPT8 RNU6-629P-201ENST00000384061 103 ntBASIC5.3□□□□□ -1.56
ZC3H4Q9UPT8 RNU6-804P-201ENST00000384286 107 ntBASIC5.3□□□□□ -1.56
ZC3H4Q9UPT8 RPL27AP8-201ENST00000424277 446 ntBASIC5.3□□□□□ -1.56
ZC3H4Q9UPT8 RPL21P66-201ENST00000426566 466 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms