Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 Y_RNA.505-201ENST00000384489 102 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 MIR218-1-201ENST00000384999 110 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 SNORD67-201ENST00000390833 111 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 SNORA16.2-201ENST00000390991 127 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 Y_RNA.599-201ENST00000410489 109 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 RNU6-1328P-201ENST00000410938 106 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 UBE2V1P10-201ENST00000414685 269 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 AL445687.1-201ENST00000439946 251 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 RNU7-180P-201ENST00000459240 63 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 RNA5SP401-201ENST00000515920 127 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 RNA5SP112-201ENST00000515937 99 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 RNU6-720P-201ENST00000516363 108 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 SNORA74D-201ENST00000516404 141 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 AC022880.1-201ENST00000534017 973 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 AL512310.1-201ENST00000548639 172 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 BNIP3P30-201ENST00000601184 574 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 RNU6-91P-201ENST00000607774 107 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 AC096772.1-201ENST00000609146 564 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 AC093788.1-201ENST00000609356 927 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 AC138627.2-201ENST00000624202 601 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 AC080128.1-201ENST00000474389 1917 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 MTND4P27-201ENST00000450813 1354 ntBASIC3.22□□□□□ -1.89
HERPUD2Q9BSE4 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 RNU6-942P-201ENST00000363002 107 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 RNU6-486P-201ENST00000363116 107 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 AL133475.1-201ENST00000404414 305 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 RNU2-25P-201ENST00000411041 191 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 MTND3P21-201ENST00000433774 331 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 HMGB1P31-201ENST00000437242 427 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 UQCRHP3-201ENST00000451503 251 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 AC109925.1-201ENST00000478069 331 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 SCARNA3-201ENST00000517097 143 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 RN7SKP40-201ENST00000517211 242 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 RN7SKP57-201ENST00000517248 293 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 CR383656.8-201ENST00000549046 145 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 MIR5004-201ENST00000579078 107 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 AC090616.3-201ENST00000582184 217 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 UBL5P2-201ENST00000583788 219 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 AC010338.1-201ENST00000621823 717 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 AC084035.1-201ENST00000634543 607 ntBASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.21□□□□□ -1.9
HERPUD2Q9BSE4 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 RNU6-1303P-201ENST00000364841 107 ntBASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 SNORA7.4-201ENST00000384249 137 ntBASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 SNORD116-20-201ENST00000384529 92 ntBASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 AL590002.1-201ENST00000406554 418 ntBASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 BTF3P7-201ENST00000407097 488 ntBASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 BX276092.3-201ENST00000424182 230 ntBASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 AC019235.1-201ENST00000503847 207 ntBASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 AC023141.11-201ENST00000508864 202 ntBASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 HMGB1P33-201ENST00000563485 527 ntBASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 AC024153.1-201ENST00000603103 365 ntBASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 AL356280.1-201ENST00000603614 379 ntBASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 AC004492.1-201ENST00000607036 742 ntBASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 AC007318.2-201ENST00000620999 243 ntBASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 AP003400.5-201ENST00000624827 617 ntBASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
HERPUD2Q9BSE4 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
HERPUD2Q9BSE4 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms