Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.55□□□□□ -2
NKX3-1Q99801 AC098614.2-201ENST00000426040 255 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 MTND4P14-201ENST00000435799 1354 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 RPS29P6-201ENST00000438196 145 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 NFU1P2-201ENST00000448700 469 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 AC117440.1-201ENST00000474107 571 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 RPS26P21-201ENST00000475397 348 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 AC006445.1-201ENST00000491925 405 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.55□□□□□ -2
NKX3-1Q99801 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.55□□□□□ -2
NKX3-1Q99801 RNU4-29P-201ENST00000515943 174 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 RNU2-69P-201ENST00000516061 100 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 SNORA31.26-201ENST00000517250 137 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.55□□□□□ -2
NKX3-1Q99801 AC022080.3-201ENST00000544433 482 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.55□□□□□ -2
NKX3-1Q99801 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC2.55□□□□□ -2
NKX3-1Q99801 AC093536.2-201ENST00000565257 1406 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 AC092325.1-201ENST00000566449 554 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 AL645944.1-201ENST00000603857 493 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.55□□□□□ -2
NKX3-1Q99801 uc_338.34-201ENST00000617467 174 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.55□□□□□ -2
NKX3-1Q99801 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.55□□□□□ -2
NKX3-1Q99801 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.55□□□□□ -2
NKX3-1Q99801 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.55□□□□□ -2
NKX3-1Q99801 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.54□□□□□ -2
NKX3-1Q99801 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.54□□□□□ -2
NKX3-1Q99801 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.54□□□□□ -2
NKX3-1Q99801 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
NKX3-1Q99801 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
NKX3-1Q99801 MIR22-201ENST00000362190 85 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 RNU4-66P-201ENST00000365199 138 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 Y_RNA.378-201ENST00000365652 113 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 AL138885.1-201ENST00000405921 675 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 RNU2-3P-201ENST00000410144 191 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 CYCSP33-201ENST00000414485 327 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 AL365496.1-201ENST00000426885 215 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 AC009414.1-201ENST00000427200 443 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 MTATP6P13-201ENST00000438531 667 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.54□□□□□ -2
NKX3-1Q99801 AC098831.1-201ENST00000440661 216 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 WASF1P1-201ENST00000447560 1131 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.54□□□□□ -2
NKX3-1Q99801 RNU7-23P-201ENST00000459465 62 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 MTCO3P38-201ENST00000468910 766 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 RPS29P25-201ENST00000481709 171 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.54□□□□□ -2
NKX3-1Q99801 AC104136.1-201ENST00000512969 394 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 RNA5SP76-201ENST00000516277 87 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 SNORA31.21-201ENST00000517180 77 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 AC009812.2-201ENST00000517657 457 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC2.54□□□□□ -2
NKX3-1Q99801 MTND4P7-201ENST00000523876 130 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.54□□□□□ -2
NKX3-1Q99801 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.54□□□□□ -2
NKX3-1Q99801 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.54□□□□□ -2
NKX3-1Q99801 MIR5004-201ENST00000579078 107 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.54□□□□□ -2
NKX3-1Q99801 YPEL5P2-201ENST00000605553 359 ntBASIC2.54□□□□□ -2
NKX3-1Q99801 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.54□□□□□ -2
NKX3-1Q99801 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.54□□□□□ -2
NKX3-1Q99801 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.54□□□□□ -2
NKX3-1Q99801 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.53□□□□□ -2
NKX3-1Q99801 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.53□□□□□ -2
NKX3-1Q99801 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.53□□□□□ -2
NKX3-1Q99801 RNA5SP139-201ENST00000364340 117 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 NDUFB4P4-201ENST00000404822 243 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 MIR1277-201ENST00000408536 78 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 RNU6-193P-201ENST00000410977 107 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 NDUFS5P4-201ENST00000412983 318 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 RPL26P27-201ENST00000414397 437 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 BX682237.1-201ENST00000415016 335 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 AL353621.1-201ENST00000418219 243 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 PGBD4P6-201ENST00000421501 610 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.53□□□□□ -2
NKX3-1Q99801 AL645937.1-202ENST00000421799 937 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 AL121601.2-201ENST00000438019 707 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.53□□□□□ -2
NKX3-1Q99801 FGF7P6-202ENST00000451282 293 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 MTATP6P7-201ENST00000453315 681 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.53□□□□□ -2
NKX3-1Q99801 snoU109.2-201ENST00000459316 135 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 RPL21P99-201ENST00000480369 423 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.53□□□□□ -2
NKX3-1Q99801 AC114786.4-201ENST00000508771 728 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.53□□□□□ -2
NKX3-1Q99801 AC008716.1-201ENST00000511084 513 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 TBCAP3-201ENST00000512475 312 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.53□□□□□ -2
NKX3-1Q99801 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.53□□□□□ -2
NKX3-1Q99801 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.53□□□□□ -2
NKX3-1Q99801 AC010653.1-201ENST00000571108 881 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.53□□□□□ -2
NKX3-1Q99801 MIR4325-201ENST00000583049 90 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.53□□□□□ -2
NKX3-1Q99801 AL451007.1-201ENST00000595491 289 ntBASIC2.53□□□□□ -2
NKX3-1Q99801 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.53□□□□□ -2
NKX3-1Q99801 AL035413.2-201ENST00000604801 525 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 124.8 ms