Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC140Q96MF4 IGLV2-34-201ENST00000490007 283 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 RNA5SP360-201ENST00000516555 118 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 SNORD19.2-201ENST00000516978 73 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC140Q96MF4 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC140Q96MF4 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC140Q96MF4 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC140Q96MF4 AC091953.3-201ENST00000623220 236 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 UBE3AP2-201ENST00000429033 2259 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC140Q96MF4 AL672167.1-203ENST00000641299 2975 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC140Q96MF4 AC015813.6-201ENST00000624409 5808 ntBASIC3.61□□□□□ -1.83
CCDC140Q96MF4 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC140Q96MF4 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC140Q96MF4 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC140Q96MF4 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 Y_RNA.237-201ENST00000364439 102 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 RNU6-281P-201ENST00000384212 103 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 RNA5SP213-201ENST00000391031 106 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 RNU6-159P-201ENST00000391080 106 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 PTMAP5-201ENST00000393073 333 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 AL358075.3-201ENST00000426289 226 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 COX6B1P7-201ENST00000430845 235 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 RPS23P7-201ENST00000466210 444 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 GZMAP1-201ENST00000503054 631 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 SNORA31.1-201ENST00000515993 133 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 SNORA31.5-201ENST00000516190 133 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 RNU6-1198P-201ENST00000516904 67 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 TRAV8-5-201ENST00000537369 341 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 TOMM20P2-201ENST00000540082 421 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 GNRHR2P1-201ENST00000555315 631 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 AL442067.1-201ENST00000613261 223 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 AC002543.1-201ENST00000299783 1954 ntBASIC3.6□□□□□ -1.83
CCDC140Q96MF4 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC140Q96MF4 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 AP001486.2-201ENST00000561652 5113 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 SNORD113-8-201ENST00000363497 74 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 SNORD27-201ENST00000363981 72 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 RNU6-748P-201ENST00000384648 107 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 U3.22-201ENST00000391120 215 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 RNU6-1001P-201ENST00000411265 100 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 AL590139.1-201ENST00000416267 400 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 OR4C10P-201ENST00000434991 931 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 AC011276.1-201ENST00000469688 323 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 AIG1P1-201ENST00000503376 148 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 HMGB3P17-201ENST00000504195 649 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 SCARNA24.2-201ENST00000516968 130 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 AC136624.4-201ENST00000573044 370 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 AC209154.1-201ENST00000582156 337 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 RPS15AP11-201ENST00000594193 385 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 AP001282.2-201ENST00000616149 309 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 SNORD98-201ENST00000636377 67 ntBASIC3.59□□□□□ -1.83
CCDC140Q96MF4 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC140Q96MF4 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
CCDC140Q96MF4 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
CCDC140Q96MF4 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
CCDC140Q96MF4 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.84
CCDC140Q96MF4 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
CCDC140Q96MF4 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC3.59□□□□□ -1.84
CCDC140Q96MF4 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC140Q96MF4 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms