Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 RPS24P1-201ENST00000438550 371 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 MTND1P30-201ENST00000441241 901 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC124916.1-201ENST00000444020 547 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC022493.1-201ENST00000492984 337 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC008526.1-201ENST00000509149 338 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC108078.2-201ENST00000510750 236 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 RNA5SP200-201ENST00000516360 103 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 RNU7-193P-201ENST00000516723 65 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 CBX3P7-201ENST00000532876 502 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC079598.5-201ENST00000547460 117 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AL138976.2-201ENST00000563989 694 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC009977.1-201ENST00000586015 570 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AL158032.1-201ENST00000605401 106 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC091304.9-201ENST00000612091 226 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC122133.1-201ENST00000613964 233 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC009090.3-201ENST00000616553 565 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC009159.2-201ENST00000617603 606 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AF246928.1-201ENST00000623768 87 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 MTND4P4-201ENST00000439033 1366 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 SNORA48.3-201ENST00000391081 134 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 RN7SKP158-201ENST00000410453 326 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 Y_RNA.598-201ENST00000410480 95 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 RNU4-53P-201ENST00000410828 140 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AC009518.2-201ENST00000418056 731 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AL353621.1-201ENST00000418219 243 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AC005005.2-201ENST00000420779 380 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 HMGN2P38-201ENST00000423806 265 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AC112771.1-201ENST00000463581 102 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AC018437.1-201ENST00000492214 406 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AC022616.3-201ENST00000523940 148 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 SNORD53-201ENST00000579969 78 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AL670379.10-201ENST00000604330 253 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AL670379.9-201ENST00000605428 253 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AC087045.1-201ENST00000605856 382 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AC087683.2-201ENST00000611384 326 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AC012409.4-201ENST00000612923 249 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AC009233.1-201ENST00000616477 371 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 MTND4P1-201ENST00000457501 1466 ntBASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CCDC40Q4G0X9 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 SNORD3E-201ENST00000362899 217 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 RNU1-72P-201ENST00000362976 153 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 RPS3AP36-201ENST00000398190 775 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 RNU2-39P-201ENST00000410604 198 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 AL160275.3-201ENST00000423876 471 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 MED13P1-201ENST00000428342 171 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 RPL7P12-201ENST00000446719 750 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 AC090515.1-201ENST00000465295 476 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 RAP1BP2-201ENST00000478270 544 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 AF213884.2-201ENST00000510417 903 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 RNU6-123P-201ENST00000516163 102 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 SCARNA16.3-201ENST00000516595 184 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 RNU5B-3P-201ENST00000516601 115 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 RNU2-46P-201ENST00000517038 113 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 ADI1P3-201ENST00000549509 470 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 AC092325.1-201ENST00000566449 554 ntBASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
CCDC40Q4G0X9 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 MTND5P6-201ENST00000422338 1798 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 RNU4-82P-201ENST00000362443 140 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 Y_RNA.22-201ENST00000362492 102 ntBASIC2.34□□□□□ -2.03
CCDC40Q4G0X9 RNU5A-2P-201ENST00000384337 116 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms