Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.57□□□□□ -2
SNX3O60493 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.57□□□□□ -2
SNX3O60493 MTND5P1-201ENST00000445440 1375 ntBASIC2.57□□□□□ -2
SNX3O60493 MAPK10-266ENST00000641066 6555 ntBASIC2.57□□□□□ -2
SNX3O60493 MTCO1P12-201ENST00000414273 1543 ntBASIC2.57□□□□□ -2
SNX3O60493 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.57□□□□□ -2
SNX3O60493 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.56□□□□□ -2
SNX3O60493 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.56□□□□□ -2
SNX3O60493 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.56□□□□□ -2
SNX3O60493 RNU6-1322P-201ENST00000364309 107 ntBASIC2.56□□□□□ -2
SNX3O60493 RNU6-1280P-201ENST00000365211 107 ntBASIC2.56□□□□□ -2
SNX3O60493 Y_RNA.372-201ENST00000365599 102 ntBASIC2.56□□□□□ -2
SNX3O60493 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.56□□□□□ -2
SNX3O60493 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.56□□□□□ -2
SNX3O60493 PGBD4P6-201ENST00000421501 610 ntBASIC2.56□□□□□ -2
SNX3O60493 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.56□□□□□ -2
SNX3O60493 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC2.56□□□□□ -2
SNX3O60493 AC005326.1-201ENST00000429197 123 ntBASIC2.56□□□□□ -2
SNX3O60493 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.56□□□□□ -2
SNX3O60493 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.56□□□□□ -2
SNX3O60493 SCARNA18-201ENST00000459004 134 ntBASIC2.56□□□□□ -2
SNX3O60493 AC107626.1-201ENST00000471084 183 ntBASIC2.56□□□□□ -2
SNX3O60493 AC083798.1-201ENST00000472671 131 ntBASIC2.56□□□□□ -2
SNX3O60493 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.56□□□□□ -2
SNX3O60493 AC116655.1-201ENST00000508324 901 ntBASIC2.56□□□□□ -2
SNX3O60493 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.56□□□□□ -2
SNX3O60493 AC107222.1-201ENST00000510899 637 ntBASIC2.56□□□□□ -2
SNX3O60493 RNU6-314P-201ENST00000516574 104 ntBASIC2.56□□□□□ -2
SNX3O60493 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.56□□□□□ -2
SNX3O60493 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.56□□□□□ -2
SNX3O60493 MIR5004-201ENST00000579078 107 ntBASIC2.56□□□□□ -2
SNX3O60493 MIR5583-1-201ENST00000580941 59 ntBASIC2.56□□□□□ -2
SNX3O60493 AC007621.1-201ENST00000604544 437 ntBASIC2.56□□□□□ -2
SNX3O60493 AC245389.1-201ENST00000605141 529 ntBASIC2.56□□□□□ -2
SNX3O60493 AC087045.1-201ENST00000605856 382 ntBASIC2.56□□□□□ -2
SNX3O60493 AC011890.2-201ENST00000613393 294 ntBASIC2.56□□□□□ -2
SNX3O60493 AC010378.1-201ENST00000619270 362 ntBASIC2.56□□□□□ -2
SNX3O60493 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.56□□□□□ -2
SNX3O60493 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.56□□□□□ -2
SNX3O60493 AC004944.1-201ENST00000517807 3059 ntBASIC2.55□□□□□ -2
SNX3O60493 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
SNX3O60493 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
SNX3O60493 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
SNX3O60493 RNU6-1303P-201ENST00000364841 107 ntBASIC2.55□□□□□ -2
SNX3O60493 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
SNX3O60493 Y_RNA.481-201ENST00000384373 102 ntBASIC2.55□□□□□ -2
SNX3O60493 Y_RNA.516-201ENST00000384541 124 ntBASIC2.55□□□□□ -2
SNX3O60493 SNORA80E-201ENST00000384744 137 ntBASIC2.55□□□□□ -2
SNX3O60493 SNORA16.2-201ENST00000390991 127 ntBASIC2.55□□□□□ -2
SNX3O60493 SNORD70.1-201ENST00000391007 85 ntBASIC2.55□□□□□ -2
SNX3O60493 RNU2-3P-201ENST00000410144 191 ntBASIC2.55□□□□□ -2
SNX3O60493 CYCSP33-201ENST00000414485 327 ntBASIC2.55□□□□□ -2
SNX3O60493 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.55□□□□□ -2
SNX3O60493 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.55□□□□□ -2
SNX3O60493 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.55□□□□□ -2
SNX3O60493 OSTCP8-201ENST00000445117 448 ntBASIC2.55□□□□□ -2
SNX3O60493 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.55□□□□□ -2
SNX3O60493 RNU7-180P-201ENST00000459240 63 ntBASIC2.55□□□□□ -2
SNX3O60493 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.55□□□□□ -2
SNX3O60493 AC011005.2-201ENST00000487324 359 ntBASIC2.55□□□□□ -2
SNX3O60493 AC006445.1-201ENST00000491925 405 ntBASIC2.55□□□□□ -2
SNX3O60493 HMGB1P30-201ENST00000492455 606 ntBASIC2.55□□□□□ -2
SNX3O60493 SEM1P1-201ENST00000506694 209 ntBASIC2.55□□□□□ -2
SNX3O60493 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.55□□□□□ -2
SNX3O60493 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.55□□□□□ -2
SNX3O60493 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.55□□□□□ -2
SNX3O60493 MIR892C-201ENST00000516410 77 ntBASIC2.55□□□□□ -2
SNX3O60493 Y_RNA.693-201ENST00000516641 110 ntBASIC2.55□□□□□ -2
SNX3O60493 CKS1BP7-201ENST00000522230 235 ntBASIC2.55□□□□□ -2
SNX3O60493 AL137161.1-201ENST00000532231 390 ntBASIC2.55□□□□□ -2
SNX3O60493 BNIP3P6-201ENST00000549284 499 ntBASIC2.55□□□□□ -2
SNX3O60493 AL512360.1-201ENST00000555346 234 ntBASIC2.55□□□□□ -2
SNX3O60493 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.55□□□□□ -2
SNX3O60493 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.55□□□□□ -2
SNX3O60493 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.55□□□□□ -2
SNX3O60493 AC093788.1-201ENST00000609356 927 ntBASIC2.55□□□□□ -2
SNX3O60493 MIR7975-201ENST00000619350 68 ntBASIC2.55□□□□□ -2
SNX3O60493 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.55□□□□□ -2
SNX3O60493 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.55□□□□□ -2
SNX3O60493 FO624990.1-201ENST00000636373 85 ntBASIC2.55□□□□□ -2
SNX3O60493 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.55□□□□□ -2
SNX3O60493 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
SNX3O60493 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SNX3O60493 AC004520.1-201ENST00000608362 1413 ntBASIC2.54□□□□□ -2
SNX3O60493 MTND4P14-201ENST00000435799 1354 ntBASIC2.54□□□□□ -2
SNX3O60493 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.54□□□□□ -2
SNX3O60493 SNORA69-201ENST00000383895 132 ntBASIC2.54□□□□□ -2
SNX3O60493 RNU6-72P-201ENST00000384285 79 ntBASIC2.54□□□□□ -2
SNX3O60493 RNU6-393P-201ENST00000384475 107 ntBASIC2.54□□□□□ -2
SNX3O60493 RNU6-19P-201ENST00000384718 107 ntBASIC2.54□□□□□ -2
SNX3O60493 U3.19-201ENST00000390893 196 ntBASIC2.54□□□□□ -2
SNX3O60493 RPS4XP7-201ENST00000406274 780 ntBASIC2.54□□□□□ -2
SNX3O60493 RNU6-607P-201ENST00000411283 108 ntBASIC2.54□□□□□ -2
SNX3O60493 USP9YP20-201ENST00000419224 558 ntBASIC2.54□□□□□ -2
SNX3O60493 PTGES3P4-201ENST00000426243 356 ntBASIC2.54□□□□□ -2
SNX3O60493 TIMM9P3-201ENST00000428659 274 ntBASIC2.54□□□□□ -2
SNX3O60493 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.54□□□□□ -2
SNX3O60493 SNORA84-201ENST00000459229 133 ntBASIC2.54□□□□□ -2
SNX3O60493 AL672167.3-201ENST00000465951 960 ntBASIC2.54□□□□□ -2
SNX3O60493 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms