Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-778P-201ENST00000363269 103 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-395P-201ENST00000365662 106 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 Y_RNA.399-201ENST00000383955 105 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 MIR128-1-201ENST00000384921 82 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 MIR483-201ENST00000385070 76 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 SNORA48.2-201ENST00000390926 124 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 RNU2-68P-201ENST00000410878 191 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 AL139281.1-201ENST00000422120 335 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 RPL36AP53-201ENST00000432891 316 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 AL360271.2-201ENST00000447710 161 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 RPL37P4-201ENST00000448908 268 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 AC104472.2-201ENST00000469035 601 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 RPS15AP34-201ENST00000487776 387 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 LRRC34P2-201ENST00000514850 553 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 RNA5SP401-201ENST00000515920 127 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 RNU4-29P-201ENST00000515943 174 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 SNORA31.1-201ENST00000515993 133 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 SNORA31.5-201ENST00000516190 133 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-143P-201ENST00000516942 93 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 AC234778.2-201ENST00000566241 354 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 AL158032.1-201ENST00000605401 106 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 AL627309.6-201ENST00000606857 840 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 ASNSP3-201ENST00000451989 1306 ntBASIC3.34□□□□□ -1.87
SYNE3Q6ZMZ3 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 U3.12-201ENST00000364498 214 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 RNU6-116P-201ENST00000384042 109 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 RNU6-38P-201ENST00000384085 107 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 SNORA44-201ENST00000384584 132 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 FGF7P8-201ENST00000402994 292 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 RNA5SP344-201ENST00000411081 104 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 BRK1P2-201ENST00000442875 223 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 RPS15AP27-201ENST00000449183 343 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 RNU6-333P-201ENST00000459117 107 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 AC092989.1-201ENST00000481235 277 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 AC022493.1-201ENST00000492984 337 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 CCDC34P1-201ENST00000507441 517 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 MIR548AC-201ENST00000585049 88 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 AL451007.1-201ENST00000595491 289 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 AC012119.1-201ENST00000603184 222 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 AL035413.2-201ENST00000604801 525 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 AC024614.3-201ENST00000637860 256 ntBASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SYNE3Q6ZMZ3 Y_RNA.33-201ENST00000362591 102 ntBASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 RNU6-82P-201ENST00000363970 107 ntBASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 Y_RNA.231-201ENST00000364358 102 ntBASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 RNU6-877P-201ENST00000383868 107 ntBASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 MIR578-201ENST00000384828 96 ntBASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 UBA52P6-201ENST00000399822 382 ntBASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 OR9R1P-201ENST00000412200 877 ntBASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 USP9YP6-201ENST00000413550 854 ntBASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 RPL26P27-201ENST00000414397 437 ntBASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 AL139415.2-201ENST00000431968 163 ntBASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 NDUFB1P2-201ENST00000449477 176 ntBASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 MTATP6P7-201ENST00000453315 681 ntBASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 AC104136.1-201ENST00000512969 394 ntBASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 RNU6-928P-201ENST00000516876 104 ntBASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 MIR5583-1-201ENST00000580941 59 ntBASIC3.32□□□□□ -1.88
SYNE3Q6ZMZ3 AC024153.1-201ENST00000603103 365 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms