Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.23□□□□□ -2.05
COL4A4P53420 ZNF720P1-201ENST00000562403 1939 ntBASIC2.23□□□□□ -2.05
COL4A4P53420 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
COL4A4P53420 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
COL4A4P53420 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.23□□□□□ -2.05
COL4A4P53420 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 CKAP2P1-201ENST00000555477 2049 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
COL4A4P53420 RNU6-839P-201ENST00000363347 108 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 Y_RNA.138-201ENST00000363462 102 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 Y_RNA.224-201ENST00000364308 111 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
COL4A4P53420 RNU6-878P-201ENST00000384578 110 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 SNORA75.4-201ENST00000391278 119 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AL356776.1-201ENST00000406574 447 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC073264.1-201ENST00000411508 416 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC2.22□□□□□ -2.05
COL4A4P53420 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.22□□□□□ -2.05
COL4A4P53420 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC2.22□□□□□ -2.05
COL4A4P53420 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.22□□□□□ -2.05
COL4A4P53420 AL445685.2-201ENST00000422551 342 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC2.22□□□□□ -2.05
COL4A4P53420 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC2.22□□□□□ -2.05
COL4A4P53420 OR4K11P-201ENST00000431829 904 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.22□□□□□ -2.05
COL4A4P53420 AC022431.1-201ENST00000450941 438 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC233279.1-201ENST00000455300 423 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 RNU6-261P-201ENST00000459506 102 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 MEMO1P3-201ENST00000459811 302 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 HMGB1P28-201ENST00000507778 552 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.22□□□□□ -2.05
COL4A4P53420 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.22□□□□□ -2.05
COL4A4P53420 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC2.22□□□□□ -2.05
COL4A4P53420 RNU6-277P-201ENST00000516272 106 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.22□□□□□ -2.05
COL4A4P53420 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.22□□□□□ -2.05
COL4A4P53420 AC020661.2-201ENST00000560114 134 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC2.22□□□□□ -2.05
COL4A4P53420 HMGN1P30-201ENST00000589286 268 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.22□□□□□ -2.05
COL4A4P53420 AP001429.1-201ENST00000602568 530 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.22□□□□□ -2.05
COL4A4P53420 AC008121.3-201ENST00000618726 433 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC090574.1-201ENST00000623186 233 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC138305.3-201ENST00000624988 240 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC2.22□□□□□ -2.05
COL4A4P53420 MTND5P42-201ENST00000637720 498 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.22□□□□□ -2.05
COL4A4P53420 AF127577.6-201ENST00000623352 2191 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 DBF4P1-201ENST00000412976 1892 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 RNU6-223P-201ENST00000362830 107 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 Y_RNA.431-201ENST00000384086 102 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 MRPL42P2-201ENST00000403169 426 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AL356432.1-201ENST00000405809 419 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 TXNP7-201ENST00000406296 293 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AL359704.1-201ENST00000411586 781 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.22□□□□□ -2.05
COL4A4P53420 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.22□□□□□ -2.05
COL4A4P53420 PDCL2P1-201ENST00000419302 352 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 MTND2P23-201ENST00000422990 651 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AL445669.1-201ENST00000426743 755 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AL358934.1-201ENST00000432346 324 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 USP9YP7-201ENST00000436723 430 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC2.22□□□□□ -2.05
COL4A4P53420 CBWD4P-201ENST00000445695 655 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.22□□□□□ -2.05
COL4A4P53420 USP9YP32-201ENST00000452432 430 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 MTND1P12-201ENST00000455231 147 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.22□□□□□ -2.05
COL4A4P53420 AC012170.1-201ENST00000495139 359 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC114981.1-201ENST00000503897 678 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC2.22□□□□□ -2.05
COL4A4P53420 HMGB3P15-201ENST00000507326 574 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
COL4A4P53420 AC006499.2-201ENST00000513470 337 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 HSPA8P13-201ENST00000523715 472 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 OR5D17P-201ENST00000531492 978 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC2.22□□□□□ -2.05
COL4A4P53420 AC110588.1-201ENST00000559699 137 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.22□□□□□ -2.05
COL4A4P53420 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC2.22□□□□□ -2.05
COL4A4P53420 MIR4307-201ENST00000582802 84 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 MIR3171-201ENST00000584270 74 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC243773.3-201ENST00000613270 256 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AL603758.1-201ENST00000618654 241 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 AC139792.3-201ENST00000623525 224 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.22□□□□□ -2.05
COL4A4P53420 CCT4P2-201ENST00000233836 1548 ntBASIC2.21□□□□□ -2.05
COL4A4P53420 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.21□□□□□ -2.06
COL4A4P53420 ZNF33BP1-201ENST00000452497 1834 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.21□□□□□ -2.06
COL4A4P53420 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
COL4A4P53420 RNU6-254P-201ENST00000363377 107 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 Y_RNA.157-201ENST00000363638 102 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 Y_RNA.166-201ENST00000363730 102 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 Y_RNA.374-201ENST00000365606 101 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 RNU6-317P-201ENST00000384031 107 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 MIR506-201ENST00000384998 124 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 MIR320C1-201ENST00000408566 88 ntBASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms