Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
MSX1P28360 RPL30P13-201ENST00000418873 348 ntBASIC4.58□□□□□ -1.68
MSX1P28360 AC010154.1-201ENST00000425857 269 ntBASIC4.58□□□□□ -1.68
MSX1P28360 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.58□□□□□ -1.68
MSX1P28360 GPM6BP3-201ENST00000442797 145 ntBASIC4.58□□□□□ -1.68
MSX1P28360 AC010285.1-201ENST00000470580 392 ntBASIC4.58□□□□□ -1.68
MSX1P28360 AL121594.1-201ENST00000475906 575 ntBASIC4.58□□□□□ -1.68
MSX1P28360 AC097462.2-201ENST00000504623 481 ntBASIC4.58□□□□□ -1.68
MSX1P28360 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.58□□□□□ -1.68
MSX1P28360 Y_RNA.797-201ENST00000515977 94 ntBASIC4.58□□□□□ -1.68
MSX1P28360 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.58□□□□□ -1.68
MSX1P28360 AC018448.1-201ENST00000552843 316 ntBASIC4.58□□□□□ -1.68
MSX1P28360 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC4.58□□□□□ -1.68
MSX1P28360 MIR4691-201ENST00000583764 85 ntBASIC4.58□□□□□ -1.68
MSX1P28360 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.58□□□□□ -1.68
MSX1P28360 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
MSX1P28360 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
MSX1P28360 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
MSX1P28360 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
MSX1P28360 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
MSX1P28360 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
MSX1P28360 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.58□□□□□ -1.68
MSX1P28360 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.58□□□□□ -1.68
MSX1P28360 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
MSX1P28360 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
MSX1P28360 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
MSX1P28360 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
MSX1P28360 U3.32-201ENST00000408116 212 ntBASIC4.57□□□□□ -1.68
MSX1P28360 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC4.57□□□□□ -1.68
MSX1P28360 BX323845.1-201ENST00000432417 179 ntBASIC4.57□□□□□ -1.68
MSX1P28360 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.57□□□□□ -1.68
MSX1P28360 AL450023.3-201ENST00000440592 271 ntBASIC4.57□□□□□ -1.68
MSX1P28360 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC4.57□□□□□ -1.68
MSX1P28360 RPS20P10-201ENST00000451209 253 ntBASIC4.57□□□□□ -1.68
MSX1P28360 RPL23AP14-201ENST00000468281 468 ntBASIC4.57□□□□□ -1.68
MSX1P28360 RNA5SP54-201ENST00000516951 92 ntBASIC4.57□□□□□ -1.68
MSX1P28360 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.57□□□□□ -1.68
MSX1P28360 HSPE1P4-201ENST00000550617 308 ntBASIC4.57□□□□□ -1.68
MSX1P28360 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.57□□□□□ -1.68
MSX1P28360 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.57□□□□□ -1.68
MSX1P28360 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.57□□□□□ -1.68
MSX1P28360 LINC00901.1-201ENST00000617252 152 ntBASIC4.57□□□□□ -1.68
MSX1P28360 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.57□□□□□ -1.68
MSX1P28360 AP000346.3-201ENST00000622821 210 ntBASIC4.57□□□□□ -1.68
MSX1P28360 MIR7641-1-201ENST00000627518 61 ntBASIC4.57□□□□□ -1.68
MSX1P28360 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.57□□□□□ -1.68
MSX1P28360 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
MSX1P28360 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
MSX1P28360 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
MSX1P28360 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
MSX1P28360 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.57□□□□□ -1.68
MSX1P28360 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
MSX1P28360 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.57□□□□□ -1.68
MSX1P28360 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.57□□□□□ -1.68
MSX1P28360 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
MSX1P28360 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.57□□□□□ -1.68
MSX1P28360 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.57□□□□□ -1.68
MSX1P28360 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
MSX1P28360 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.56□□□□□ -1.68
MSX1P28360 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
MSX1P28360 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
MSX1P28360 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.56□□□□□ -1.68
MSX1P28360 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.56□□□□□ -1.68
MSX1P28360 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.56□□□□□ -1.68
MSX1P28360 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.56□□□□□ -1.68
MSX1P28360 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
MSX1P28360 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.56□□□□□ -1.68
MSX1P28360 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.56□□□□□ -1.68
MSX1P28360 MAPK10-263ENST00000641052 4307 ntBASIC4.56□□□□□ -1.68
MSX1P28360 MTND5P35-201ENST00000557537 1720 ntBASIC4.56□□□□□ -1.68
MSX1P28360 RNU1-140P-201ENST00000365040 165 ntBASIC4.56□□□□□ -1.68
MSX1P28360 RNU6-898P-201ENST00000365627 104 ntBASIC4.56□□□□□ -1.68
MSX1P28360 MIR539-201ENST00000365690 78 ntBASIC4.56□□□□□ -1.68
MSX1P28360 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
MSX1P28360 Y_RNA.498-201ENST00000384460 102 ntBASIC4.56□□□□□ -1.68
MSX1P28360 MIR513C-201ENST00000401352 84 ntBASIC4.56□□□□□ -1.68
MSX1P28360 RNU6-1199P-201ENST00000411249 104 ntBASIC4.56□□□□□ -1.68
MSX1P28360 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.56□□□□□ -1.68
MSX1P28360 AC112220.1-201ENST00000434628 355 ntBASIC4.56□□□□□ -1.68
MSX1P28360 RPL35AP21-201ENST00000437667 333 ntBASIC4.56□□□□□ -1.68
MSX1P28360 AC007969.2-201ENST00000441891 191 ntBASIC4.56□□□□□ -1.68
MSX1P28360 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.56□□□□□ -1.68
MSX1P28360 RN7SL319P-201ENST00000480656 221 ntBASIC4.56□□□□□ -1.68
MSX1P28360 IGLV2-34-201ENST00000490007 283 ntBASIC4.56□□□□□ -1.68
MSX1P28360 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC4.56□□□□□ -1.68
MSX1P28360 AC016632.1-201ENST00000503994 196 ntBASIC4.56□□□□□ -1.68
MSX1P28360 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
MSX1P28360 SNORA25.12-201ENST00000516202 82 ntBASIC4.56□□□□□ -1.68
MSX1P28360 RNU6-155P-201ENST00000516347 100 ntBASIC4.56□□□□□ -1.68
MSX1P28360 SNORA70.16-201ENST00000516390 95 ntBASIC4.56□□□□□ -1.68
MSX1P28360 RNA5SP43-201ENST00000516559 110 ntBASIC4.56□□□□□ -1.68
MSX1P28360 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.56□□□□□ -1.68
MSX1P28360 MIR4270-201ENST00000581799 70 ntBASIC4.56□□□□□ -1.68
MSX1P28360 MIR4737-201ENST00000583979 81 ntBASIC4.56□□□□□ -1.68
MSX1P28360 AC020895.1-201ENST00000595362 272 ntBASIC4.56□□□□□ -1.68
MSX1P28360 DEFB117-201ENST00000602356 141 ntBASIC4.56□□□□□ -1.68
MSX1P28360 AC004467.1-201ENST00000615678 330 ntBASIC4.56□□□□□ -1.68
MSX1P28360 AC004825.2-201ENST00000616634 455 ntBASIC4.56□□□□□ -1.68
MSX1P28360 AL591926.8-201ENST00000616876 211 ntBASIC4.56□□□□□ -1.68
MSX1P28360 MESTIT1_1.1-201ENST00000618871 140 ntBASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 174.9 ms