Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CYCSP32-201ENST00000440548 321 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 UQCRBP2-201ENST00000447827 297 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 RPS5P7-201ENST00000456664 608 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 S100A11P1-201ENST00000477525 312 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 TRAPPC2P7-201ENST00000509650 231 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 RNU1-6P-201ENST00000516290 144 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 KLKP1-201ENST00000595979 403 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 AC136601.2-201ENST00000604356 474 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 AC018445.2-201ENST00000622987 260 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 AC091905.4-201ENST00000623432 202 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 MTND1P7-201ENST00000632801 297 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 AC027290.2-201ENST00000623210 18662 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 AC008568.2-201ENST00000623862 2313 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.73
HIF3AQ9Y2N7 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 MAPK10-286ENST00000641208 8747 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-626P-201ENST00000363354 107 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-1175P-201ENST00000365200 107 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-20P-201ENST00000384106 107 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-1168P-201ENST00000390831 104 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 AL133270.1-201ENST00000402635 279 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 Y_RNA.597-201ENST00000410463 100 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 RN7SKP213-201ENST00000410746 298 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 AP000907.1-201ENST00000428428 510 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 SNRPEP9-201ENST00000436794 238 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 POLR2KP2-201ENST00000438155 177 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 AC112498.1-201ENST00000444401 332 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 AC009237.8-201ENST00000445492 379 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 AC007395.1-201ENST00000451333 677 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 AURKAPS2-201ENST00000454983 333 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 AC117440.1-201ENST00000474107 571 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 RPL26P26-201ENST00000480251 434 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 RPS23P1-201ENST00000491662 432 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 RNA5SP360-201ENST00000516555 118 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-567P-201ENST00000516746 107 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 AK6P2-201ENST00000549020 471 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 MIR5695-201ENST00000579717 85 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 MIR4423-201ENST00000580922 80 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 AL049539.1-201ENST00000611964 459 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 LINC00901.1-201ENST00000617252 152 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 AC006001.4-201ENST00000622243 395 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 U6.99-201ENST00000637524 83 ntBASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HIF3AQ9Y2N7 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-105P-201ENST00000363909 104 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 Y_RNA.435-201ENST00000384095 112 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 Y_RNA.441-201ENST00000384123 112 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 Y_RNA.488-201ENST00000384403 102 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 SNORD20-201ENST00000384550 80 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-658P-201ENST00000384606 106 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 Y_RNA.568-201ENST00000384742 113 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 Y_RNA.570-201ENST00000384750 101 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 SNORA46.1-201ENST00000391069 153 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 MIR921-201ENST00000401133 56 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 MIR937-201ENST00000401271 86 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 OOSP1P1-201ENST00000423265 274 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 AL162725.1-201ENST00000435405 301 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 Z82210.1-201ENST00000440037 231 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 IFNA11P-201ENST00000446352 526 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 SNORD2.1-201ENST00000458762 69 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 RPSAP50-201ENST00000481955 852 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-1114P-201ENST00000516022 107 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 RNA5SP272-201ENST00000516095 111 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 AC133555.2-201ENST00000550213 292 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 MIR4782-201ENST00000577987 79 ntBASIC4.26□□□□□ -1.73
HIF3AQ9Y2N7 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms