Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AL122016.1-201ENST00000403365 367 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 AL592148.1-201ENST00000413568 445 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 AL513185.2-201ENST00000425543 193 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 ERLEC1P1-201ENST00000433806 578 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.05□□□□□ -1.92
SIX4Q9UIU6 RPS29P6-201ENST00000438196 145 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 CBWD4P-201ENST00000445695 655 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC3.05□□□□□ -1.92
SIX4Q9UIU6 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.05□□□□□ -1.92
SIX4Q9UIU6 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.05□□□□□ -1.92
SIX4Q9UIU6 RPL7P5-201ENST00000471472 736 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 RPL31P60-201ENST00000478450 367 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SIX4Q9UIU6 AL359273.1-201ENST00000510918 627 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.05□□□□□ -1.92
SIX4Q9UIU6 AC010486.1-201ENST00000511793 424 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 AC008549.1-201ENST00000512900 643 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.05□□□□□ -1.92
SIX4Q9UIU6 RNU6-927P-201ENST00000516199 100 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 RNU6-875P-201ENST00000516488 106 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 RNA5SP471-201ENST00000516971 106 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.05□□□□□ -1.92
SIX4Q9UIU6 TRAV37-201ENST00000553906 342 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 UBE2V2P2-201ENST00000587677 504 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 AP002826.1-201ENST00000608835 315 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 AC104260.1-201ENST00000616660 539 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 uc_338.11-201ENST00000619132 160 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 AL136221.1-201ENST00000621449 509 ntBASIC3.05□□□□□ -1.92
SIX4Q9UIU6 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
SIX4Q9UIU6 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
SIX4Q9UIU6 MTND4P35-201ENST00000604257 1375 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 Y_RNA.72-201ENST00000362894 103 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 RNU6-522P-201ENST00000364497 107 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AL139039.1-201ENST00000401900 692 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.04□□□□□ -1.92
SIX4Q9UIU6 RPS12P24-201ENST00000412619 387 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.04□□□□□ -1.92
SIX4Q9UIU6 Z85995.1-201ENST00000415547 335 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 BTF3L4P3-201ENST00000418879 476 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AL645937.1-202ENST00000421799 937 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 COTL1P1-201ENST00000422309 375 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 NDUFB4P7-201ENST00000423198 363 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AC012498.1-201ENST00000424037 437 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 HMGB1P27-201ENST00000431429 603 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AC104058.1-201ENST00000448028 297 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.04□□□□□ -1.92
SIX4Q9UIU6 RNU6-953P-201ENST00000459154 107 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AC091179.1-201ENST00000461606 579 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AP001486.1-201ENST00000463339 476 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 RPL23AP11-201ENST00000475260 469 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 TTC39CP1-201ENST00000512513 755 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AC091826.1-201ENST00000514065 313 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 Y_RNA.665-201ENST00000516177 98 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AL137161.1-201ENST00000532231 390 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AC025253.1-201ENST00000613623 543 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AL110115.1-201ENST00000614396 364 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AC063943.3-201ENST00000615562 356 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AL359547.2-201ENST00000615810 418 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.04□□□□□ -1.92
SIX4Q9UIU6 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.04□□□□□ -1.92
SIX4Q9UIU6 AC092593.1-201ENST00000515413 1815 ntBASIC3.04□□□□□ -1.92
SIX4Q9UIU6 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SIX4Q9UIU6 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SIX4Q9UIU6 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.04□□□□□ -1.92
SIX4Q9UIU6 FAM35CP-201ENST00000554755 2470 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 HSPA8P4-201ENST00000511877 1920 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 MTND4P14-201ENST00000435799 1354 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.03□□□□□ -1.92
SIX4Q9UIU6 Y_RNA.378-201ENST00000365652 113 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 RNU6-1127P-201ENST00000384580 107 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 MIR512-1-201ENST00000384913 84 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 AL591034.1-201ENST00000407447 340 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 RNA5SP111-201ENST00000411386 101 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 AL451074.5-201ENST00000415894 435 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
SIX4Q9UIU6 CALM2P2-201ENST00000428512 440 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC3.03□□□□□ -1.92
SIX4Q9UIU6 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.03□□□□□ -1.92
SIX4Q9UIU6 AL590639.1-201ENST00000456484 337 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 AP000852.1-201ENST00000472460 573 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.03□□□□□ -1.92
SIX4Q9UIU6 AC046134.1-201ENST00000514454 666 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 LRRC34P2-201ENST00000514850 553 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 BTF3P12-201ENST00000519620 469 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 AC107953.1-201ENST00000522216 297 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 MTND4P7-201ENST00000523876 130 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.03□□□□□ -1.92
SIX4Q9UIU6 AC011712.1-201ENST00000588959 234 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 AC174048.1-201ENST00000603389 144 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 AC013553.2-201ENST00000604244 589 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 MIR15A-201ENST00000607334 83 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 AC090115.4-201ENST00000609970 188 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms