Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PRELID2P1-201ENST00000552837 301 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 AC131055.1-201ENST00000584626 316 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 AC009831.4-201ENST00000620744 325 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 AC132068.1-201ENST00000623805 459 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 SNORA17.5-201ENST00000630429 132 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
VPS9D1Q9Y2B5 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.4□□□□□ -1.55
VPS9D1Q9Y2B5 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
VPS9D1Q9Y2B5 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
VPS9D1Q9Y2B5 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
VPS9D1Q9Y2B5 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC5.4□□□□□ -1.55
VPS9D1Q9Y2B5 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
VPS9D1Q9Y2B5 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 OR9K1P-202ENST00000641111 3217 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 RNA5SP319-201ENST00000362768 119 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 Y_RNA.85-201ENST00000363014 111 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 Y_RNA.220-201ENST00000364244 109 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 RNU6-1141P-201ENST00000364520 107 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 RNA5SP241-201ENST00000391326 114 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 AC079355.1-201ENST00000421770 223 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 AC007919.1-201ENST00000429380 217 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 AC007215.1-201ENST00000464893 276 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 RN7SKP43-201ENST00000516173 320 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 SNORD84-203ENST00000584275 78 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 AC011445.2-201ENST00000599274 173 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 AC244107.2-201ENST00000611773 76 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 AC134878.1-201ENST00000619901 243 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 AL691477.1-201ENST00000624398 162 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 Z95331.1-201ENST00000623075 23112 ntBASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS9D1Q9Y2B5 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 AL353796.1-201ENST00000561542 3241 ntBASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 SNORD56.1-201ENST00000362913 68 ntBASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 Y_RNA.310-201ENST00000365063 113 ntBASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 SNORA5.1-201ENST00000384275 131 ntBASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 PPIAP21-201ENST00000464473 501 ntBASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 RN7SL51P-201ENST00000468230 285 ntBASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 RNU6ATAC17P-201ENST00000516074 71 ntBASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 RNU6-107P-201ENST00000516643 102 ntBASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 AC108738.1-201ENST00000603703 237 ntBASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 MIR4302-201ENST00000638058 60 ntBASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
VPS9D1Q9Y2B5 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 AP001029.2-203ENST00000589795 4910 ntBASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 AC092268.1-201ENST00000342691 405 ntBASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 SNORA51.8-201ENST00000384234 132 ntBASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 RNU6-1113P-201ENST00000384348 107 ntBASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 Y_RNA.544-201ENST00000384650 113 ntBASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 MIR544A-201ENST00000384855 91 ntBASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 AL357515.1-201ENST00000402967 542 ntBASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 RNU6-383P-201ENST00000410864 94 ntBASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 RN7SKP286-201ENST00000410894 299 ntBASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 NDUFS5P4-201ENST00000412983 318 ntBASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 AC012306.1-201ENST00000423267 114 ntBASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 AC078809.1-201ENST00000427601 140 ntBASIC5.37□□□□□ -1.55
VPS9D1Q9Y2B5 RPL19P16-201ENST00000433839 588 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms