Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC108479.2-201ENST00000617314 601 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.52□□□□□ -2.01
PTPN4P29074 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.52□□□□□ -2.01
PTPN4P29074 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.52□□□□□ -2.01
PTPN4P29074 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.51□□□□□ -2.01
PTPN4P29074 ELL2P3-201ENST00000457883 1602 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
PTPN4P29074 RNU6-778P-201ENST00000363269 103 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
PTPN4P29074 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.51□□□□□ -2.01
PTPN4P29074 AL139039.1-201ENST00000401900 692 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 AL356057.3-201ENST00000402607 340 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 MIR1302-8-201ENST00000408342 128 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.51□□□□□ -2.01
PTPN4P29074 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.51□□□□□ -2.01
PTPN4P29074 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.51□□□□□ -2.01
PTPN4P29074 AC098826.1-201ENST00000433943 471 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 HMGB3P12-201ENST00000438745 556 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 MTND4P25-201ENST00000441039 533 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 AC011816.1-201ENST00000441346 546 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.51□□□□□ -2.01
PTPN4P29074 RNU7-26P-201ENST00000458980 63 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 AC107626.1-201ENST00000471084 183 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 RPS29P20-201ENST00000489592 171 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 RPS27AP10-201ENST00000496103 208 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 SCARNA17.1-201ENST00000516211 143 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 SCARNA17.2-201ENST00000516334 143 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 RNA5SP148-201ENST00000516527 94 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.51□□□□□ -2.01
PTPN4P29074 AL356057.1-201ENST00000533798 831 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.51□□□□□ -2.01
PTPN4P29074 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
PTPN4P29074 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.51□□□□□ -2.01
PTPN4P29074 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.51□□□□□ -2.01
PTPN4P29074 ARL2BPP2-201ENST00000550907 489 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 BNIP3P8-201ENST00000597863 560 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 AL358072.1-201ENST00000604156 575 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 SCARNA17.4-201ENST00000614296 143 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 AL158063.1-201ENST00000615349 536 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 AC006338.1-201ENST00000618453 749 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 Z69908.1-201ENST00000622603 247 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.51□□□□□ -2.01
PTPN4P29074 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.51□□□□□ -2.01
PTPN4P29074 TEX21P-201ENST00000447107 1476 ntBASIC2.51□□□□□ -2.01
PTPN4P29074 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
PTPN4P29074 AC010889.1-201ENST00000566193 2666 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
PTPN4P29074 AC073343.1-201ENST00000328239 651 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 RNU6-512P-201ENST00000364438 103 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 RNU5E-6P-201ENST00000365574 115 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 SNORD116-2-201ENST00000384274 95 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 SNORD116-6-201ENST00000384711 96 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
PTPN4P29074 HMGN1P14-201ENST00000412459 517 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 USP9YP20-201ENST00000419224 558 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 RPS15AP12-201ENST00000419498 388 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 OOSP1P1-201ENST00000423265 274 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 MTCO3P30-201ENST00000426425 670 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 AL589872.1-201ENST00000426602 288 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.5□□□□□ -2.01
PTPN4P29074 MTND6P13-201ENST00000443510 523 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 AC003071.1-201ENST00000451219 789 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 AP000852.1-201ENST00000472460 573 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.5□□□□□ -2.01
PTPN4P29074 AC098591.2-201ENST00000510152 315 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.5□□□□□ -2.01
PTPN4P29074 RNA5SP282-201ENST00000516355 108 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 RNU1-104P-201ENST00000517280 175 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.5□□□□□ -2.01
PTPN4P29074 AP001646.1-201ENST00000527936 915 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 AC087241.2-201ENST00000535801 324 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 AP002770.2-201ENST00000543613 532 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.5□□□□□ -2.01
PTPN4P29074 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.5□□□□□ -2.01
PTPN4P29074 AC010620.1-201ENST00000601088 1102 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 AC091304.9-201ENST00000612091 226 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 AC011890.2-201ENST00000613393 294 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.5□□□□□ -2.01
PTPN4P29074 CU459211.1-201ENST00000635667 749 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 MIR7157-201ENST00000635801 60 ntBASIC2.5□□□□□ -2.01
PTPN4P29074 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.5□□□□□ -2.01
PTPN4P29074 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.5□□□□□ -2.01
PTPN4P29074 MTND5P30-201ENST00000452896 1731 ntBASIC2.49□□□□□ -2.01
PTPN4P29074 RNU5E-1-201ENST00000362477 120 ntBASIC2.49□□□□□ -2.01
PTPN4P29074 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.49□□□□□ -2.01
PTPN4P29074 RNU1-138P-201ENST00000384093 164 ntBASIC2.49□□□□□ -2.01
PTPN4P29074 AL139397.2-201ENST00000404529 772 ntBASIC2.49□□□□□ -2.01
PTPN4P29074 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.49□□□□□ -2.01
PTPN4P29074 RNU2-36P-201ENST00000410361 191 ntBASIC2.49□□□□□ -2.01
PTPN4P29074 RN7SKP142-201ENST00000411236 328 ntBASIC2.49□□□□□ -2.01
PTPN4P29074 RPS3AP3-201ENST00000411933 242 ntBASIC2.49□□□□□ -2.01
PTPN4P29074 USP9YP6-201ENST00000413550 854 ntBASIC2.49□□□□□ -2.01
PTPN4P29074 AL353729.1-201ENST00000425044 720 ntBASIC2.49□□□□□ -2.01
PTPN4P29074 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.49□□□□□ -2.01
PTPN4P29074 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.49□□□□□ -2.01
PTPN4P29074 AL022238.1-201ENST00000442557 355 ntBASIC2.49□□□□□ -2.01
PTPN4P29074 BRK1P2-201ENST00000442875 223 ntBASIC2.49□□□□□ -2.01
PTPN4P29074 MTATP6P26-201ENST00000445926 662 ntBASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms