Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 FRG1CP-201ENST00000358464 769 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 Y_RNA.6-201ENST00000362350 114 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 SNORD9-201ENST00000362566 104 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 RNU1-105P-201ENST00000363470 161 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 SNORA4.3-201ENST00000365564 137 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 SNORA54-201ENST00000384281 123 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 SNORD37.1-201ENST00000390968 65 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 RNU6-817P-201ENST00000391083 104 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 SNORD115-47-201ENST00000391226 86 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 RNA5SP354-201ENST00000391247 136 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 OR51A5P-201ENST00000415429 942 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 MTND1P4-201ENST00000435196 415 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 ATP5C1P1-201ENST00000441945 895 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 RPL23AP20-201ENST00000447965 421 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AC087588.1-201ENST00000462203 316 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AC092989.1-201ENST00000481235 277 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 RPS15AP34-201ENST00000487776 387 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AC093663.1-201ENST00000497190 394 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AC092436.1-201ENST00000506450 503 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 RNU6-914P-201ENST00000516749 109 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AK6P1-201ENST00000540219 478 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 MIR5004-201ENST00000579078 107 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 MIR4775-201ENST00000581168 75 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AC078899.3-201ENST00000599065 212 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AC010620.2-201ENST00000600135 313 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AL359547.2-201ENST00000615810 418 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 SNORD39.4-201ENST00000620099 78 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 AC011155.2-201ENST00000623202 216 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 MTND5P27-201ENST00000428871 1720 ntBASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 RNU6-270P-201ENST00000364131 105 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 RNU6-483P-201ENST00000384088 108 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 RNU6-1158P-201ENST00000391167 107 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 FCF1P9-201ENST00000412546 282 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 AL513477.1-202ENST00000417061 214 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 AL109913.1-201ENST00000421173 514 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 AL353678.1-201ENST00000422735 741 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 SNRPEP9-201ENST00000436794 238 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 HMGB3P11-201ENST00000440127 604 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 UBBP3-201ENST00000445497 241 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 RPS29P20-201ENST00000489592 171 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 SUMO2P6-201ENST00000505273 288 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 AMZ2P1-203ENST00000565833 850 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 MIR4524B-201ENST00000581569 115 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 AL033523.1-201ENST00000605153 153 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 MIR7843-201ENST00000622274 79 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 AL137790.1-201ENST00000634283 177 ntBASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.74□□□□□ -1.97
PDLIM3Q53GG5 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 MTND5P17-201ENST00000418405 1603 ntBASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 SNORD56.3-201ENST00000363507 71 ntBASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 RNU6-884P-201ENST00000363889 107 ntBASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 SNORD56.5-201ENST00000364281 72 ntBASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 RNU1-140P-201ENST00000365040 165 ntBASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 RPS4XP8-201ENST00000402039 771 ntBASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 RNU2-68P-201ENST00000410878 191 ntBASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 Z99755.1-201ENST00000414048 380 ntBASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 AC107083.1-201ENST00000439643 279 ntBASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 FDX1P2-201ENST00000450769 375 ntBASIC2.73□□□□□ -1.97
PDLIM3Q53GG5 CACYBPP2-201ENST00000453625 678 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 169.7 ms