Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU6-1198P-201ENST00000516904 67 ntBASIC4.69□□□□□ -1.66
MSX1P28360 RNA5SP291-201ENST00000517222 105 ntBASIC4.69□□□□□ -1.66
MSX1P28360 AC006349.1-201ENST00000555526 235 ntBASIC4.69□□□□□ -1.66
MSX1P28360 TGIF1P1-201ENST00000558095 802 ntBASIC4.69□□□□□ -1.66
MSX1P28360 AC040958.1-201ENST00000561102 201 ntBASIC4.69□□□□□ -1.66
MSX1P28360 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.69□□□□□ -1.66
MSX1P28360 MIR4330-201ENST00000579077 105 ntBASIC4.69□□□□□ -1.66
MSX1P28360 AL138963.2-201ENST00000605137 226 ntBASIC4.69□□□□□ -1.66
MSX1P28360 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC4.69□□□□□ -1.66
MSX1P28360 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.69□□□□□ -1.66
MSX1P28360 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.69□□□□□ -1.66
MSX1P28360 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
MSX1P28360 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSX1P28360 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
MSX1P28360 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
MSX1P28360 INTS6P1-201ENST00000504674 2530 ntBASIC4.69□□□□□ -1.66
MSX1P28360 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSX1P28360 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
MSX1P28360 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.68□□□□□ -1.66
MSX1P28360 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
MSX1P28360 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSX1P28360 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSX1P28360 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
MSX1P28360 RNU6-818P-201ENST00000364837 108 ntBASIC4.68□□□□□ -1.66
MSX1P28360 AL357075.1-201ENST00000404107 726 ntBASIC4.68□□□□□ -1.66
MSX1P28360 MTHFD2P2-201ENST00000407725 247 ntBASIC4.68□□□□□ -1.66
MSX1P28360 RNU2-2P-201ENST00000410396 191 ntBASIC4.68□□□□□ -1.66
MSX1P28360 RNU6-1245P-201ENST00000411130 106 ntBASIC4.68□□□□□ -1.66
MSX1P28360 OR2AH1P-201ENST00000425717 928 ntBASIC4.68□□□□□ -1.66
MSX1P28360 Z82210.1-201ENST00000440037 231 ntBASIC4.68□□□□□ -1.66
MSX1P28360 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.68□□□□□ -1.66
MSX1P28360 KC877373.1-201ENST00000479066 408 ntBASIC4.68□□□□□ -1.66
MSX1P28360 RN7SL441P-201ENST00000492388 296 ntBASIC4.68□□□□□ -1.66
MSX1P28360 AC108145.1-201ENST00000503770 153 ntBASIC4.68□□□□□ -1.66
MSX1P28360 RNA5SP272-201ENST00000516095 111 ntBASIC4.68□□□□□ -1.66
MSX1P28360 Y_RNA.719-201ENST00000517156 106 ntBASIC4.68□□□□□ -1.66
MSX1P28360 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.68□□□□□ -1.66
MSX1P28360 AC107016.1-201ENST00000550463 337 ntBASIC4.68□□□□□ -1.66
MSX1P28360 AL359881.1-201ENST00000602916 267 ntBASIC4.68□□□□□ -1.66
MSX1P28360 AC087783.2-201ENST00000605070 562 ntBASIC4.68□□□□□ -1.66
MSX1P28360 RNU2-4P-201ENST00000606190 192 ntBASIC4.68□□□□□ -1.66
MSX1P28360 U2.15-201ENST00000611544 191 ntBASIC4.68□□□□□ -1.66
MSX1P28360 U2.16-201ENST00000613119 191 ntBASIC4.68□□□□□ -1.66
MSX1P28360 U2.12-201ENST00000613778 191 ntBASIC4.68□□□□□ -1.66
MSX1P28360 U2.9-201ENST00000615427 191 ntBASIC4.68□□□□□ -1.66
MSX1P28360 AC090132.2-201ENST00000615881 347 ntBASIC4.68□□□□□ -1.66
MSX1P28360 U2.11-201ENST00000616345 191 ntBASIC4.68□□□□□ -1.66
MSX1P28360 U2.2-201ENST00000616535 191 ntBASIC4.68□□□□□ -1.66
MSX1P28360 U2.3-201ENST00000617785 191 ntBASIC4.68□□□□□ -1.66
MSX1P28360 U2.19-201ENST00000618602 191 ntBASIC4.68□□□□□ -1.66
MSX1P28360 RNU2-1-201ENST00000618664 191 ntBASIC4.68□□□□□ -1.66
MSX1P28360 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.68□□□□□ -1.66
MSX1P28360 U2.6-201ENST00000619225 191 ntBASIC4.68□□□□□ -1.66
MSX1P28360 U2.5-201ENST00000619465 191 ntBASIC4.68□□□□□ -1.66
MSX1P28360 U2.10-201ENST00000620268 191 ntBASIC4.68□□□□□ -1.66
MSX1P28360 AP001642.1-201ENST00000624727 2117 ntBASIC4.68□□□□□ -1.66
MSX1P28360 U6.99-201ENST00000637524 83 ntBASIC4.68□□□□□ -1.66
MSX1P28360 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.68□□□□□ -1.66
MSX1P28360 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
MSX1P28360 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
MSX1P28360 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.68□□□□□ -1.66
MSX1P28360 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSX1P28360 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.68□□□□□ -1.66
MSX1P28360 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.68□□□□□ -1.66
MSX1P28360 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
MSX1P28360 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
MSX1P28360 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
MSX1P28360 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.67□□□□□ -1.66
MSX1P28360 AL109809.4-201ENST00000603520 2185 ntBASIC4.67□□□□□ -1.66
MSX1P28360 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
MSX1P28360 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
MSX1P28360 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSX1P28360 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.67□□□□□ -1.66
MSX1P28360 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSX1P28360 SNURFL-201ENST00000309296 343 ntBASIC4.67□□□□□ -1.66
MSX1P28360 RNU4-80P-201ENST00000363200 141 ntBASIC4.67□□□□□ -1.66
MSX1P28360 RNA5SP123-201ENST00000363244 119 ntBASIC4.67□□□□□ -1.66
MSX1P28360 RNA5SP235-201ENST00000365411 114 ntBASIC4.67□□□□□ -1.66
MSX1P28360 MIR141-201ENST00000384975 95 ntBASIC4.67□□□□□ -1.66
MSX1P28360 SNORA40-201ENST00000388090 126 ntBASIC4.67□□□□□ -1.66
MSX1P28360 MIR1290-201ENST00000408735 78 ntBASIC4.67□□□□□ -1.66
MSX1P28360 AC016397.1-201ENST00000412463 242 ntBASIC4.67□□□□□ -1.66
MSX1P28360 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX1P28360 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.67□□□□□ -1.66
MSX1P28360 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX1P28360 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC4.67□□□□□ -1.66
MSX1P28360 AC009220.1-201ENST00000451614 275 ntBASIC4.67□□□□□ -1.66
MSX1P28360 AL132838.2-201ENST00000492041 314 ntBASIC4.67□□□□□ -1.66
MSX1P28360 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX1P28360 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX1P28360 AP004607.1-201ENST00000524456 203 ntBASIC4.67□□□□□ -1.66
MSX1P28360 MIR548X2-201ENST00000579776 100 ntBASIC4.67□□□□□ -1.66
MSX1P28360 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.67□□□□□ -1.66
MSX1P28360 AC091905.4-201ENST00000623432 202 ntBASIC4.67□□□□□ -1.66
MSX1P28360 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSX1P28360 AC004925.1-201ENST00000624256 2706 ntBASIC4.67□□□□□ -1.66
MSX1P28360 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.67□□□□□ -1.66
MSX1P28360 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
MSX1P28360 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.67□□□□□ -1.66
MSX1P28360 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms