Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL9A1P20849 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL9A1P20849 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL9A1P20849 AL138820.1-201ENST00000617901 5305 ntBASIC5.42□□□□□ -1.54
COL9A1P20849 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
COL9A1P20849 MARK2P15-201ENST00000432204 2186 ntBASIC5.42□□□□□ -1.54
COL9A1P20849 RNU6-144P-201ENST00000383951 107 ntBASIC5.42□□□□□ -1.54
COL9A1P20849 RNY3P5-201ENST00000384127 102 ntBASIC5.42□□□□□ -1.54
COL9A1P20849 RNU6-880P-201ENST00000384526 107 ntBASIC5.42□□□□□ -1.54
COL9A1P20849 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
COL9A1P20849 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC5.42□□□□□ -1.54
COL9A1P20849 AC244670.1-201ENST00000436879 112 ntBASIC5.42□□□□□ -1.54
COL9A1P20849 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.42□□□□□ -1.54
COL9A1P20849 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC5.42□□□□□ -1.54
COL9A1P20849 AL591473.1-201ENST00000464297 313 ntBASIC5.42□□□□□ -1.54
COL9A1P20849 AC011276.1-201ENST00000469688 323 ntBASIC5.42□□□□□ -1.54
COL9A1P20849 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC5.42□□□□□ -1.54
COL9A1P20849 AC146944.2-203ENST00000502493 354 ntBASIC5.42□□□□□ -1.54
COL9A1P20849 GLUD1P3-202ENST00000508551 200 ntBASIC5.42□□□□□ -1.54
COL9A1P20849 AC139495.1-202ENST00000513164 354 ntBASIC5.42□□□□□ -1.54
COL9A1P20849 RNU6-561P-201ENST00000516222 102 ntBASIC5.42□□□□□ -1.54
COL9A1P20849 RNU2-60P-201ENST00000517290 128 ntBASIC5.42□□□□□ -1.54
COL9A1P20849 AC122688.1-201ENST00000541494 223 ntBASIC5.42□□□□□ -1.54
COL9A1P20849 MIR4724-201ENST00000579485 89 ntBASIC5.42□□□□□ -1.54
COL9A1P20849 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.42□□□□□ -1.54
COL9A1P20849 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.42□□□□□ -1.54
COL9A1P20849 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
COL9A1P20849 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
COL9A1P20849 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
COL9A1P20849 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
COL9A1P20849 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
COL9A1P20849 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL9A1P20849 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.42□□□□□ -1.54
COL9A1P20849 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.42□□□□□ -1.54
COL9A1P20849 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
COL9A1P20849 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL9A1P20849 AC004925.1-201ENST00000624256 2706 ntBASIC5.41□□□□□ -1.54
COL9A1P20849 AL022323.4-201ENST00000623980 13120 ntBASIC5.41□□□□□ -1.54
COL9A1P20849 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
COL9A1P20849 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.41□□□□□ -1.54
COL9A1P20849 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL9A1P20849 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC5.41□□□□□ -1.54
COL9A1P20849 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL9A1P20849 MIR450A1-201ENST00000362262 91 ntBASIC5.41□□□□□ -1.54
COL9A1P20849 RNU1-94P-201ENST00000362627 173 ntBASIC5.41□□□□□ -1.54
COL9A1P20849 RNU1-59P-201ENST00000364829 162 ntBASIC5.41□□□□□ -1.54
COL9A1P20849 GNG5P2-201ENST00000372054 207 ntBASIC5.41□□□□□ -1.54
COL9A1P20849 SNORA18.3-201ENST00000384122 132 ntBASIC5.41□□□□□ -1.54
COL9A1P20849 Y_RNA.456-201ENST00000384232 111 ntBASIC5.41□□□□□ -1.54
COL9A1P20849 MIR554-201ENST00000384874 96 ntBASIC5.41□□□□□ -1.54
COL9A1P20849 AL031003.1-201ENST00000404229 172 ntBASIC5.41□□□□□ -1.54
COL9A1P20849 HMGB1P37-201ENST00000439613 609 ntBASIC5.41□□□□□ -1.54
COL9A1P20849 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.41□□□□□ -1.54
COL9A1P20849 RN7SL542P-201ENST00000467147 294 ntBASIC5.41□□□□□ -1.54
COL9A1P20849 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC5.41□□□□□ -1.54
COL9A1P20849 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC5.41□□□□□ -1.54
COL9A1P20849 AC012640.5-201ENST00000623897 319 ntBASIC5.41□□□□□ -1.54
COL9A1P20849 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC5.41□□□□□ -1.54
COL9A1P20849 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL9A1P20849 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL9A1P20849 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL9A1P20849 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.41□□□□□ -1.54
COL9A1P20849 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.41□□□□□ -1.54
COL9A1P20849 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
COL9A1P20849 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.41□□□□□ -1.54
COL9A1P20849 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL9A1P20849 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL9A1P20849 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL9A1P20849 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC5.41□□□□□ -1.54
COL9A1P20849 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL9A1P20849 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
COL9A1P20849 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL9A1P20849 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL9A1P20849 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL9A1P20849 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL9A1P20849 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL9A1P20849 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.4□□□□□ -1.54
COL9A1P20849 RN7SKP280-201ENST00000364196 304 ntBASIC5.4□□□□□ -1.54
COL9A1P20849 MIR105-1-201ENST00000385222 81 ntBASIC5.4□□□□□ -1.54
COL9A1P20849 RN7SKP202-201ENST00000410439 330 ntBASIC5.4□□□□□ -1.54
COL9A1P20849 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC5.4□□□□□ -1.54
COL9A1P20849 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.4□□□□□ -1.54
COL9A1P20849 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC5.4□□□□□ -1.54
COL9A1P20849 AC245047.4-201ENST00000433189 144 ntBASIC5.4□□□□□ -1.54
COL9A1P20849 TRAPPC2P9-201ENST00000434556 343 ntBASIC5.4□□□□□ -1.54
COL9A1P20849 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.4□□□□□ -1.54
COL9A1P20849 AC092754.1-201ENST00000472975 479 ntBASIC5.4□□□□□ -1.54
COL9A1P20849 RNU6-1061P-201ENST00000516530 99 ntBASIC5.4□□□□□ -1.54
COL9A1P20849 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC5.4□□□□□ -1.54
COL9A1P20849 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC5.4□□□□□ -1.54
COL9A1P20849 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.4□□□□□ -1.54
COL9A1P20849 AC020895.1-201ENST00000595362 272 ntBASIC5.4□□□□□ -1.54
COL9A1P20849 AC004832.5-201ENST00000608677 401 ntBASIC5.4□□□□□ -1.54
COL9A1P20849 AC106754.2-201ENST00000623006 233 ntBASIC5.4□□□□□ -1.54
COL9A1P20849 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL9A1P20849 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.4□□□□□ -1.55
COL9A1P20849 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.4□□□□□ -1.55
COL9A1P20849 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL9A1P20849 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL9A1P20849 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC5.4□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms