Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.86□□□□□ -1.79
HMGB1P09429 AC011611.1-201ENST00000552179 197 ntBASIC3.86□□□□□ -1.79
HMGB1P09429 MIR4528-201ENST00000577763 90 ntBASIC3.86□□□□□ -1.79
HMGB1P09429 RPS15AP11-201ENST00000594193 385 ntBASIC3.86□□□□□ -1.79
HMGB1P09429 AC068790.2-201ENST00000602601 557 ntBASIC3.86□□□□□ -1.79
HMGB1P09429 AC096772.1-201ENST00000609146 564 ntBASIC3.86□□□□□ -1.79
HMGB1P09429 AC093788.1-201ENST00000609356 927 ntBASIC3.86□□□□□ -1.79
HMGB1P09429 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.86□□□□□ -1.79
HMGB1P09429 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
HMGB1P09429 AL161431.1-201ENST00000618966 4205 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
HMGB1P09429 OR56A5-201ENST00000340110 738 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 RNA5SP119-201ENST00000362715 117 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 RNU6-348P-201ENST00000384386 107 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC3.85□□□□□ -1.79
HMGB1P09429 AC093151.1-201ENST00000427711 313 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 AL159987.2-201ENST00000432754 307 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 MTND4P32-201ENST00000437189 1237 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.85□□□□□ -1.79
HMGB1P09429 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.85□□□□□ -1.79
HMGB1P09429 C1DP4-201ENST00000455429 424 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 SNORA84-201ENST00000459229 133 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.85□□□□□ -1.79
HMGB1P09429 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.85□□□□□ -1.79
HMGB1P09429 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.85□□□□□ -1.79
HMGB1P09429 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
HMGB1P09429 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.85□□□□□ -1.79
HMGB1P09429 SUB1P2-201ENST00000556401 297 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 AL391840.1-201ENST00000571144 367 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 MIR4775-201ENST00000581168 75 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 RNU6-91P-201ENST00000607774 107 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 AC109347.2-201ENST00000610220 349 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 CR381653.2-201ENST00000624041 768 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.85□□□□□ -1.79
HMGB1P09429 MIR3529-201ENST00000637713 78 ntBASIC3.85□□□□□ -1.79
HMGB1P09429 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HMGB1P09429 RNU6-805P-201ENST00000365643 106 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 RNU6-1029P-201ENST00000384109 107 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 SNORD116-20-201ENST00000384529 92 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 RNU2-9P-201ENST00000410194 145 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 RNA5SP344-201ENST00000411081 104 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 UBE2V1P10-201ENST00000414685 269 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.84□□□□□ -1.79
HMGB1P09429 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.84□□□□□ -1.79
HMGB1P09429 AC115115.1-201ENST00000449927 248 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 RPL21P10-201ENST00000463521 490 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.84□□□□□ -1.79
HMGB1P09429 AC110794.1-201ENST00000505816 425 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 AC117532.1-201ENST00000514638 323 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 RNU1-86P-201ENST00000516108 154 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 SNORD27.1-201ENST00000516319 72 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 Y_RNA.688-201ENST00000516565 95 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 RNU1-107P-201ENST00000516617 154 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 RNU6-1178P-201ENST00000516674 107 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC3.84□□□□□ -1.79
HMGB1P09429 AP002963.1-201ENST00000530590 184 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.84□□□□□ -1.79
HMGB1P09429 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.84□□□□□ -1.79
HMGB1P09429 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.84□□□□□ -1.79
HMGB1P09429 AC026585.1-201ENST00000619582 524 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 AC024581.2-201ENST00000619986 252 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 SCARNA4-202ENST00000625402 129 ntBASIC3.84□□□□□ -1.79
HMGB1P09429 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.84□□□□□ -1.79
HMGB1P09429 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HMGB1P09429 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
HMGB1P09429 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
HMGB1P09429 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
HMGB1P09429 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
HMGB1P09429 RNU6-942P-201ENST00000363002 107 ntBASIC3.83□□□□□ -1.8
HMGB1P09429 SNORD114-19-201ENST00000363072 75 ntBASIC3.83□□□□□ -1.8
HMGB1P09429 RNA5SP44-201ENST00000410446 133 ntBASIC3.83□□□□□ -1.8
HMGB1P09429 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.83□□□□□ -1.8
HMGB1P09429 AC008155.2-201ENST00000464337 397 ntBASIC3.83□□□□□ -1.8
HMGB1P09429 AP000852.1-201ENST00000472460 573 ntBASIC3.83□□□□□ -1.8
HMGB1P09429 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.83□□□□□ -1.8
HMGB1P09429 SCARNA20.6-201ENST00000517251 106 ntBASIC3.83□□□□□ -1.8
HMGB1P09429 AP002404.1-201ENST00000532005 451 ntBASIC3.83□□□□□ -1.8
HMGB1P09429 CBX3P7-201ENST00000532876 502 ntBASIC3.83□□□□□ -1.8
HMGB1P09429 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.83□□□□□ -1.8
HMGB1P09429 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.83□□□□□ -1.8
HMGB1P09429 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.83□□□□□ -1.8
HMGB1P09429 AL162713.1-201ENST00000604480 262 ntBASIC3.83□□□□□ -1.8
HMGB1P09429 AC009161.2-201ENST00000624626 138 ntBASIC3.83□□□□□ -1.8
HMGB1P09429 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC3.83□□□□□ -1.8
HMGB1P09429 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.83□□□□□ -1.8
HMGB1P09429 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
HMGB1P09429 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HMGB1P09429 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HMGB1P09429 AC092447.7-201ENST00000422212 1621 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 RNA5SP393-201ENST00000363423 117 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 SNORD56.3-201ENST00000363507 71 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 RNU4-48P-201ENST00000365559 182 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 MIR183-201ENST00000384958 110 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 RNU6-1140P-201ENST00000410517 106 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 SUMO1P4-201ENST00000429430 302 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 AL365400.1-201ENST00000431854 640 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 HMGB1P31-201ENST00000437242 427 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 RPL23AP22-201ENST00000437556 453 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.82□□□□□ -1.8
HMGB1P09429 AC018437.1-201ENST00000492214 406 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms